Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu3g02991 | ATGGCTGATGATGATGTGGACTTTTCGAAACTGTTTCCCGGAGATGATGATGACGATGACGGCATGTTTTATATAGATATGCAGACCGTTCAGAAGGTTCTCGATGAAGACGATGATTGTGATTTTCTGGAGAAAATTCCCGAGGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAATTCGTGACACATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCACATTTTTCTAGGTTGGCCTTTGCAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGACGTGTCAGATTCTGGTGTCAGAGGTTCAGTTGGTGTATCGGATTCAGTAGCAAATTCTTGGTTTGATTGTGAACGTGAAAACCAGGGACCTCGATCTCAGGCTTGCTCCTCCCCAAATGCCTTTCCTGGTAATCTCAGTAAGTTACTCTCTCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAAAGGACCAGAGTCTCTAAACATGAGATACCTGCTTGTAGTGTGGAATCAAGTTTCCCTGAGGCACAGGCAAACAATTTATCAATTTGTGGAGATAATTTGAATCCAAGTCTGTGGAAGGGTGAAAATGAGATCCAATTCAAGCATTTGCAAGAGGATGTTGATTTTGAAAATGCTTCTATCAGTTCTATAGTTGACAATGATGATGTAAATACCGAAGGATACGTTGAAGACACCATTGGAGGAGTTTCTGGGCAACAAGAAAATGATTCATGTACATCTTTTGAGGTGTTTATGGATGCTGATAGATCTTTGCATGTTGCAACTTCAACTGATTCTACTATAGGGCAAGGTTCCCATGCTTCCGTTGATTTCATTGACTACCATCAATCTTCAACTTTTTACCAGGGAATGCATAATGGACCCTTTGCTGCTGACTCTTCTCTTGGTATTTTGCCAAATGGTTTCTGTTCTCAGTTGTTTCCAAATGACGAAATGATGAATAATGTGAAGGCCAGAAATGTGGAGTTAAATGCTGATATTACATGTATTAGTAGTGGCATGCCCTCAAGTACTACTGGTTGGATGTCTTTTCAAGATAGTCAAATCATGTTAACTGATAATGTTTATCCATCTTCTCATTCTAGTAAAGTTATTTTTGATGACATGTCATCACTGTCTCTTTCAGCTTTTGATTCATACATGCCATATGGAGACCATTACCAAAACAGTTTTCACTGTGAGGATGCTAAGTTCAATGTTGGCCAATCGGTGAAACAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATGTTTTGAGAATGAGGATAATTATCCAGATATATCTGGGATATCCAATCAGTATCAAGATAGCAATGGTGGAATTGCTAGTTGTCAAGGAAATGTAGACAATTTGAGTTTAAAAGCTGCAAATATATCATCTTGGCCCCATACCCAGGCACTAATTACCTGTGAGAAGCAGTTTGGTTCTGTTAAGAGAGAAGGAGGGGTTCAACATAAACTTGTTGATTCTCATATTTCAAAAGGAAAAGTTGAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTTCTCCAACAAGTCGATCTACAATCATTGGGAATTCCTTTAATATATCTCAATCGTTTAGAAATGTTGATTCTCAATCTTACATGGTTGGAGGTACAAGGCTGAAGACATGTGATGAGCGTAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGAAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCGTCGAGTTTATACTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAATATCAACTATTGCATTGATATTAAAGGAAAGAGCCCCGTTACTTAATGGGAGCATCATTGCCCAAAAAAGTGAATTGGATTCTCTGAATCTGGATGCGGATGATGACGTGCTTCCTCAGAATGGTAGAGTAAAGGAAGAATCTAATATTTGTGAGGATATGTCAAATAGATATCCAGTCAAGAGCATGAATTTGCCAAACCCAACAAAGGGAAGGCCATCAGCTGGGACCCTTATTGTTTGTCCCACCAGTGTCCTACGTCAATGGGCGGAAGAGTTGCGTAGCAAGGTAACTAGTCAATCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCTAAGTATGATGTTGTCCTAACAACTTATTCCATTGTTAGCATGGAGGTTCCTAAGCAACCTTCAACTGACAAAGATGACGAGGAAAATGGAAATTTTGAAGATCATGCTATACCAAGTAGGAAAAGAAAAAGTCCTTCTAATTCTAGTAAAAGTGGCAAGAAGAAATTGGATGACTTAGTTCTTAAGGCTAATGCTCGGCCACTTGCAAAGGTGGCATGGTTTAGGATTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTCGTGCAAAACGAAGATGGTGTTTGTCAGGAACTCCTATCCAGAATGCAATAGACGATCTCTACAGTTACTTTAGATTTCTAAGATATGACCCTTATGACGTCTATACATCATTTTGTTCTAGAATTAAGAACCCAATTAGCAGAAATCCAAAAAATGGATACAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGACGAACCAAAGATACACTTCTTGATGGGGAACCTATTATTTCTTTGCCGCCTAAAAGTATAGAGCTGAAAAAGGTTGATTTTTCAATGGAGGAACGTGATTTCTATTGCAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCCGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTAATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTAAGGAAAAACAAATATCTCTTCTGAAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAATGATCCTCCAGAAGATGCGTTTGTTTCAGTTTGTGGTCATGTTTTCTGTAATCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTAGGGTATTTTCAAAAGCCACTCTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCATCTGGTTGCTCTGGTTCTGAAGCGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTAAAGTCCATGTGTAAGCCACAGTTCTGTACATCAAAAAATCCTTCTGAGCATAGCACTTTCAGGGAAGATAATGATTGCCCTGGGAACCCTTCCAACGCTGACAATAGGAAATCTTTCATAGATTCTCACGAGTGTCAAAATTTGTCTGATGATAATAGATGCCATAGTGATTCAGTTACTGTTGTAGGAGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGGACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTAGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATAGGGCAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAGGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAAAGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA | 4071 | 0.3979 | MADDDVDFSKLFPGDDDDDDGMFYIDMQTVQKVLDEDDDCDFLEKIPEDSSSKNVSPSESGIRDTFQIQNGSQVLEEPHFSRLAFADSVTSCSPFCSDVSDSGVRGSVGVSDSVANSWFDCERENQGPRSQACSSPNAFPGNLSKLLSPGESDEVFCTERTRVSKHEIPACSVESSFPEAQANNLSICGDNLNPSLWKGENEIQFKHLQEDVDFENASISSIVDNDDVNTEGYVEDTIGGVSGQQENDSCTSFEVFMDADRSLHVATSTDSTIGQGSHASVDFIDYHQSSTFYQGMHNGPFAADSSLGILPNGFCSQLFPNDEMMNNVKARNVELNADITCISSGMPSSTTGWMSFQDSQIMLTDNVYPSSHSSKVIFDDMSSLSLSAFDSYMPYGDHYQNSFHCEDAKFNVGQSVKQTPGIFSSVGCQAYQCFENEDNYPDISGISNQYQDSNGGIASCQGNVDNLSLKAANISSWPHTQALITCEKQFGSVKREGGVQHKLVDSHISKGKVENFHVEEDPDVCIIEDISHPSPTSRSTIIGNSFNISQSFRNVDSQSYMVGGTRLKTCDERNILRVALQDLSQPKSEVSLPEGLLEVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTISTIALILKERAPLLNGSIIAQKSELDSLNLDADDDVLPQNGRVKEESNICEDMSNRYPVKSMNLPNPTKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQSNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSTDKDDEENGNFEDHAIPSRKRKSPSNSSKSGKKKLDDLVLKANARPLAKVAWFRIVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFCSRIKNPISRNPKNGYRKLQAVLKTIMLRRTKDTLLDGEPIISLPPKSIELKKVDFSMEERDFYCKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPKEKQISLLKCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIRLSTSRVFSKATLNSCLSDQGCDNSSGCSGSEAEEFEPWSQSQPYESSKIKAALEVLKSMCKPQFCTSKNPSEHSTFREDNDCPGNPSNADNRKSFIDSHECQNLSDDNRCHSDSVTVVGEKAIVFSQWTRMLDLLEACLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGDRQSRLTVDDLKYLFMM* | 1357 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu3g02991 | 1356 | CDD | SF2_C_SNF | 1201 | 1308 | - | - | |
| Lapu3g02991 | 1356 | Gene3D | - | 1090 | 1356 | IPR027417 | - | |
| Lapu3g02991 | 1356 | ProSitePatterns | Zinc finger RING-type signature. | 1054 | 1063 | IPR017907 | - | |
| Lapu3g02991 | 1356 | FunFam | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 805 | 935 | - | - | |
| Lapu3g02991 | 1356 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1192 | 1351 | IPR001650 | - | |
| Lapu3g02991 | 1356 | Pfam | Helicase conserved C-terminal domain | 1199 | 1298 | IPR001650 | - | |
| Lapu3g02991 | 1356 | ProSiteProfiles | Zinc finger RING-type profile. | 1039 | 1078 | IPR001841 | - | |
| Lapu3g02991 | 1356 | MobiDBLite | consensus disorder prediction | 1149 | 1171 | - | - | |
| Lapu3g02991 | 1356 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 616 | 885 | IPR014001 | - | |
| Lapu3g02991 | 1356 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 590 | 923 | IPR027417 | - |
Showing 1 to 10 of 25 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu3g02991 | - | - | gmx:100802436 | 2180.6 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu3g02991 | 3 | 53081419 | 53092222 | Lapu6g01220 | 6 | 12039183 | 12048085 | PCT |
Showing 1 to 1 of 1 entries