Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02991 ATGGCTGATGATGATGTGGACTTTTCGAAACTGTTTCCCGGAGATGATGATGACGATGACGGCATGTTTTATATAGATATGCAGACCGTTCAGAAGGTTCTCGATGAAGACGATGATTGTGATTTTCTGGAGAAAATTCCCGAGGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAATTCGTGACACATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCACATTTTTCTAGGTTGGCCTTTGCAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGACGTGTCAGATTCTGGTGTCAGAGGTTCAGTTGGTGTATCGGATTCAGTAGCAAATTCTTGGTTTGATTGTGAACGTGAAAACCAGGGACCTCGATCTCAGGCTTGCTCCTCCCCAAATGCCTTTCCTGGTAATCTCAGTAAGTTACTCTCTCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAAAGGACCAGAGTCTCTAAACATGAGATACCTGCTTGTAGTGTGGAATCAAGTTTCCCTGAGGCACAGGCAAACAATTTATCAATTTGTGGAGATAATTTGAATCCAAGTCTGTGGAAGGGTGAAAATGAGATCCAATTCAAGCATTTGCAAGAGGATGTTGATTTTGAAAATGCTTCTATCAGTTCTATAGTTGACAATGATGATGTAAATACCGAAGGATACGTTGAAGACACCATTGGAGGAGTTTCTGGGCAACAAGAAAATGATTCATGTACATCTTTTGAGGTGTTTATGGATGCTGATAGATCTTTGCATGTTGCAACTTCAACTGATTCTACTATAGGGCAAGGTTCCCATGCTTCCGTTGATTTCATTGACTACCATCAATCTTCAACTTTTTACCAGGGAATGCATAATGGACCCTTTGCTGCTGACTCTTCTCTTGGTATTTTGCCAAATGGTTTCTGTTCTCAGTTGTTTCCAAATGACGAAATGATGAATAATGTGAAGGCCAGAAATGTGGAGTTAAATGCTGATATTACATGTATTAGTAGTGGCATGCCCTCAAGTACTACTGGTTGGATGTCTTTTCAAGATAGTCAAATCATGTTAACTGATAATGTTTATCCATCTTCTCATTCTAGTAAAGTTATTTTTGATGACATGTCATCACTGTCTCTTTCAGCTTTTGATTCATACATGCCATATGGAGACCATTACCAAAACAGTTTTCACTGTGAGGATGCTAAGTTCAATGTTGGCCAATCGGTGAAACAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATGTTTTGAGAATGAGGATAATTATCCAGATATATCTGGGATATCCAATCAGTATCAAGATAGCAATGGTGGAATTGCTAGTTGTCAAGGAAATGTAGACAATTTGAGTTTAAAAGCTGCAAATATATCATCTTGGCCCCATACCCAGGCACTAATTACCTGTGAGAAGCAGTTTGGTTCTGTTAAGAGAGAAGGAGGGGTTCAACATAAACTTGTTGATTCTCATATTTCAAAAGGAAAAGTTGAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTTCTCCAACAAGTCGATCTACAATCATTGGGAATTCCTTTAATATATCTCAATCGTTTAGAAATGTTGATTCTCAATCTTACATGGTTGGAGGTACAAGGCTGAAGACATGTGATGAGCGTAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGAAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCGTCGAGTTTATACTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAATATCAACTATTGCATTGATATTAAAGGAAAGAGCCCCGTTACTTAATGGGAGCATCATTGCCCAAAAAAGTGAATTGGATTCTCTGAATCTGGATGCGGATGATGACGTGCTTCCTCAGAATGGTAGAGTAAAGGAAGAATCTAATATTTGTGAGGATATGTCAAATAGATATCCAGTCAAGAGCATGAATTTGCCAAACCCAACAAAGGGAAGGCCATCAGCTGGGACCCTTATTGTTTGTCCCACCAGTGTCCTACGTCAATGGGCGGAAGAGTTGCGTAGCAAGGTAACTAGTCAATCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCTAAGTATGATGTTGTCCTAACAACTTATTCCATTGTTAGCATGGAGGTTCCTAAGCAACCTTCAACTGACAAAGATGACGAGGAAAATGGAAATTTTGAAGATCATGCTATACCAAGTAGGAAAAGAAAAAGTCCTTCTAATTCTAGTAAAAGTGGCAAGAAGAAATTGGATGACTTAGTTCTTAAGGCTAATGCTCGGCCACTTGCAAAGGTGGCATGGTTTAGGATTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTCGTGCAAAACGAAGATGGTGTTTGTCAGGAACTCCTATCCAGAATGCAATAGACGATCTCTACAGTTACTTTAGATTTCTAAGATATGACCCTTATGACGTCTATACATCATTTTGTTCTAGAATTAAGAACCCAATTAGCAGAAATCCAAAAAATGGATACAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGACGAACCAAAGATACACTTCTTGATGGGGAACCTATTATTTCTTTGCCGCCTAAAAGTATAGAGCTGAAAAAGGTTGATTTTTCAATGGAGGAACGTGATTTCTATTGCAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCCGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTAATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTAAGGAAAAACAAATATCTCTTCTGAAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAATGATCCTCCAGAAGATGCGTTTGTTTCAGTTTGTGGTCATGTTTTCTGTAATCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTAGGGTATTTTCAAAAGCCACTCTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCATCTGGTTGCTCTGGTTCTGAAGCGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTAAAGTCCATGTGTAAGCCACAGTTCTGTACATCAAAAAATCCTTCTGAGCATAGCACTTTCAGGGAAGATAATGATTGCCCTGGGAACCCTTCCAACGCTGACAATAGGAAATCTTTCATAGATTCTCACGAGTGTCAAAATTTGTCTGATGATAATAGATGCCATAGTGATTCAGTTACTGTTGTAGGAGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGGACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTAGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATAGGGCAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAGGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAAAGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 4071 0.3979 MADDDVDFSKLFPGDDDDDDGMFYIDMQTVQKVLDEDDDCDFLEKIPEDSSSKNVSPSESGIRDTFQIQNGSQVLEEPHFSRLAFADSVTSCSPFCSDVSDSGVRGSVGVSDSVANSWFDCERENQGPRSQACSSPNAFPGNLSKLLSPGESDEVFCTERTRVSKHEIPACSVESSFPEAQANNLSICGDNLNPSLWKGENEIQFKHLQEDVDFENASISSIVDNDDVNTEGYVEDTIGGVSGQQENDSCTSFEVFMDADRSLHVATSTDSTIGQGSHASVDFIDYHQSSTFYQGMHNGPFAADSSLGILPNGFCSQLFPNDEMMNNVKARNVELNADITCISSGMPSSTTGWMSFQDSQIMLTDNVYPSSHSSKVIFDDMSSLSLSAFDSYMPYGDHYQNSFHCEDAKFNVGQSVKQTPGIFSSVGCQAYQCFENEDNYPDISGISNQYQDSNGGIASCQGNVDNLSLKAANISSWPHTQALITCEKQFGSVKREGGVQHKLVDSHISKGKVENFHVEEDPDVCIIEDISHPSPTSRSTIIGNSFNISQSFRNVDSQSYMVGGTRLKTCDERNILRVALQDLSQPKSEVSLPEGLLEVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTISTIALILKERAPLLNGSIIAQKSELDSLNLDADDDVLPQNGRVKEESNICEDMSNRYPVKSMNLPNPTKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQSNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSTDKDDEENGNFEDHAIPSRKRKSPSNSSKSGKKKLDDLVLKANARPLAKVAWFRIVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFCSRIKNPISRNPKNGYRKLQAVLKTIMLRRTKDTLLDGEPIISLPPKSIELKKVDFSMEERDFYCKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPKEKQISLLKCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIRLSTSRVFSKATLNSCLSDQGCDNSSGCSGSEAEEFEPWSQSQPYESSKIKAALEVLKSMCKPQFCTSKNPSEHSTFREDNDCPGNPSNADNRKSFIDSHECQNLSDDNRCHSDSVTVVGEKAIVFSQWTRMLDLLEACLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGDRQSRLTVDDLKYLFMM* 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02991 1356 CDD SF2_C_SNF 1201 1308 - -
Lapu3g02991 1356 Gene3D - 1090 1356 IPR027417 -
Lapu3g02991 1356 ProSitePatterns Zinc finger RING-type signature. 1054 1063 IPR017907 -
Lapu3g02991 1356 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 805 935 - -
Lapu3g02991 1356 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1192 1351 IPR001650 -
Lapu3g02991 1356 Pfam Helicase conserved C-terminal domain 1199 1298 IPR001650 -
Lapu3g02991 1356 ProSiteProfiles Zinc finger RING-type profile. 1039 1078 IPR001841 -
Lapu3g02991 1356 MobiDBLite consensus disorder prediction 1149 1171 - -
Lapu3g02991 1356 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 616 885 IPR014001 -
Lapu3g02991 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 923 IPR027417 -
Lapu3g02991 1356 CDD DEXDc_SHPRH-like 601 923 - -
Lapu3g02991 1356 Gene3D - 569 663 IPR038718 -
Lapu3g02991 1356 SMART ultradead3 597 900 IPR014001 -
Lapu3g02991 1356 MobiDBLite consensus disorder prediction 776 798 - -
Lapu3g02991 1356 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 519 1355 - -
Lapu3g02991 1356 MobiDBLite consensus disorder prediction 773 812 - -
Lapu3g02991 1356 Pfam Zinc finger, C3HC4 type (RING finger) 1039 1075 IPR018957 GO:0046872
Lapu3g02991 1356 Gene3D - 812 924 IPR038718 -
Lapu3g02991 1356 Gene3D - 696 783 IPR038718 -
Lapu3g02991 1356 SMART helicmild6 1215 1298 IPR001650 -
Lapu3g02991 1356 SMART ring_2 1039 1077 IPR001841 -
Lapu3g02991 1356 Pfam SNF2-related domain 621 1000 IPR000330 GO:0005524|GO:0140658
Lapu3g02991 1356 SUPERFAMILY RING/U-box 1036 1086 - -
Lapu3g02991 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1355 IPR027417 -
Lapu3g02991 1356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1032 1089 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02991 Lapu-Chr3 53081419 53092222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02991 524 1355 RAD5 or RAD16-like Gene Family AT1G61140 61.401 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu3g02991 SNF2_N 2e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02991 - - gmx:100802436 2180.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02991 3 53081419 53092222 Lapu6g01220 6 12039183 12048085 PCT