Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02988 ATGGGTGGTTGGAATTCAGACTTGAATTTGCAAATTTTCATCTTTTCAATGTTGACTTTCGGTGCAACTTTCGGTGTTGGAGACACTGATCCACTTGATGTTGCGGCAATCAATAGTTTGTATGTGGCTCTTGGCTCACCACCCCTTGAGGGGTGGAAAGCCACAGGAGGAGATCCATGCTTGGAACAATGGCAAGGTGTGAGTTGTGTCTTCTCCAACATAACTGCTTTGCGACTGGGAGGCATGAATTTAAGTGGGCAACTGGGAAGTAATTTGGATTTCCCATCCATCATAGAATTGGATCTTAGCAACAACCAGATTGGAGGGGCCATTCCATCCACTTTATCCCCTACTTTAAGGAACTTGTCACTCGCAGCTAATAAATTAAATGGGAGCATTCCAGATGCCTTGTCCTCATTGACTCAATTGTCAGACTTGTCATTAAAAGATAACCATCTGAATGGACAAATTCCAGATGCATTTCTACAGTTCACTGGTTTGATGAATATGGATCTGTCTAGCAACAACTTGAGTGGTCAGCTGCCTCCGTCGTTGGAGAATTTGTCATCTCTTATCACATTACATTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTTTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCTGGGCCAATTCCTCCAGAGTTGTTGAGTATCCCTAATTTCAGAAAAGATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCAGCTGCTTCCCCTGCACCCATTGCTATGGCTCCTTCCCCGGAAAAATCACCTTGGAAAGCGGCAAATAATCCCTCTGCTACCACCATAAAAGCACCAATACCTGCAATTGCCGAGAGGTCTTTCAAAACTAAGAAATTAGTTTGGATTTTTGGTGCAGGCTTTTTAATATTTATTGCATTAGGAGTTTGTCTTCTAATGTTGTGGTGCTTTAAGAGAAGACCAGAGATCAAGAGTTATAAGAAACACAACATGAATGTGTATAAAAGATCTTTGCATAAACGTACAAGCAGTGACTCCCTTTTTGAAGCAACTGATAATGAGGAGAAAGGATGGGGTTCAAAACTTCCACCCTTGCAGCCAGCACCACCACATCAACTCCCAATCATTCCTGGAGAGAATTTAGTCATCAATCAAGCTATATTTGGCAAAGCAACCAAAAGACAAATTGTAACGAATTCCATCAAAGTTTATACCGTTGCATCACTTCAGCAGTACACAAATAGTTTTTCCCAAGAAAATTATATTGGGGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTTAGGAAGCTGAATGCTACAGCTTCTATGGGGCAAAATCACGAACAGTTTCTTCAATTAGCTTCCAGTGTCTCCAGAATTCAACATGATAATATTGTAAAGCTTATGGGCTACTGTGCGGAGTATAGCCAACGCCTACTTGTATATGAGTATTGCGGTAATGGCACCCTTCATGATGCATTGCATACAGATGATAAACTTAAGATTAAACTTTCATGGGATGATCGCATTCAAGTGTCACTAGGTGCGGCAAGAGCTTTAGAGTATTTGCATGAGTACTTTCAGCCACCTATCGTGCACCAAAACTTTACGGCTGCTAATGTACTCCTCAATGACAAGTTGGAAGTGCAGGTCTCTGATTGTGGATTAGGTTCTTTACTATCTTCAGGCTCTGCTAGTCAGTTGCCGGGACACCAACTCCCAGCTAATGGTTACAGTGCTCCAGAATATGAGAATGGAAGTTATACACTGCAAAGTGATGTCTTTAGCTTTGGAGTTGTAATGCTAGAACTTCTCACTGGACGAAAATCCTATGACAGCTCACTGCCTCGTGGAGAGCAGTTTTTGGTGAGATGGGCAGTCCCTCAACTCCATGACATAGATGCATTATCAAAAATGGTTGACCCCTCTTTAAATGGAGAATATCCTAAGAAATCCTTGTCTCGTTTTGCAGACATTATTTCTTCATGTATACAGCATGAGCCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 2103 0.4189 MGGWNSDLNLQIFIFSMLTFGATFGVGDTDPLDVAAINSLYVALGSPPLEGWKATGGDPCLEQWQGVSCVFSNITALRLGGMNLSGQLGSNLDFPSIIELDLSNNQIGGAIPSTLSPTLRNLSLAANKLNGSIPDALSSLTQLSDLSLKDNHLNGQIPDAFLQFTGLMNMDLSSNNLSGQLPPSLENLSSLITLHLQNNQLSGTLFVLQDLPLQDLNIENNIFSGPIPPELLSIPNFRKDGNPFNTTIIPSPPAASPAPIAMAPSPEKSPWKAANNPSATTIKAPIPAIAERSFKTKKLVWIFGAGFLIFIALGVCLLMLWCFKRRPEIKSYKKHNMNVYKRSLHKRTSSDSLFEATDNEEKGWGSKLPPLQPAPPHQLPIIPGENLVINQAIFGKATKRQIVTNSIKVYTVASLQQYTNSFSQENYIGEGMLGPVYRAELPDGKLLAVRKLNATASMGQNHEQFLQLASSVSRIQHDNIVKLMGYCAEYSQRLLVYEYCGNGTLHDALHTDDKLKIKLSWDDRIQVSLGAARALEYLHEYFQPPIVHQNFTAANVLLNDKLEVQVSDCGLGSLLSSGSASQLPGHQLPANGYSAPEYENGSYTLQSDVFSFGVVMLELLTGRKSYDSSLPRGEQFLVRWAVPQLHDIDALSKMVDPSLNGEYPKKSLSRFADIISSCIQHEPEFRPAMSEIVQDLLRMM* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02988 700 Gene3D Ribonuclease Inhibitor 34 251 IPR032675 -
Lapu3g02988 700 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 390 499 - -
Lapu3g02988 700 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 698 IPR046959 -
Lapu3g02988 700 ProSiteProfiles Protein kinase domain profile. 422 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02988 700 Gene3D Phosphorylase Kinase; domain 1 386 499 - -
Lapu3g02988 700 SUPERFAMILY Protein kinase-like (PK-like) 403 696 IPR011009 -
Lapu3g02988 700 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 255 - -
Lapu3g02988 700 Pfam Protein tyrosine and serine/threonine kinase 425 696 IPR001245 GO:0004672|GO:0006468
Lapu3g02988 700 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Lapu3g02988 700 Gene3D Transferase(Phosphotransferase) domain 1 501 700 - -
Lapu3g02988 700 SUPERFAMILY L domain-like 32 236 - -
Lapu3g02988 700 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 500 700 - -
Lapu3g02988 700 MobiDBLite consensus disorder prediction 255 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02988 Lapu-Chr3 53034511 53041962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02988 82 700 Strubbelig Receptor Gene Family AT1G11130 42.755 9.47e-178 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lapu3g02988 PK_Tyr_Ser-Thr 8.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02988 - - pvu:PHAVU_002G224200g 1234.94