Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02986 ATGGGAGCAGAGTTGGTGGTGACGTGGAGCACCTGGGAGGAGCTTCTCCTCGGTGGAGCTATTCTCCGGCACGGAACCCGAGATTGGACCGTCGTTGCCGCTGAACTCAAGACCCGAACCGTTTCGCCATTTATTTTCACACCCGAGGTTTGTAAAGCCAAATATGAAGAGTTTCGGCAGCAGTATTCTGGGTGCATGGCTTGGTTTGAGGAGCTTAAGAAGAAAAGGGTGGCAGAGCTTAAGAGAGATTTGGAGCTTTCTGAAGAATTAATTGGGTCCCTTGAGTTAAAGCTTGAATCTCTTAAGACTGGAATGGACGAGAAAAGAGCTGATTGCCATGTCGATGATGGGTCAGTTGGACCTGAATTACATGTTTCGTTGCAAAAATTAGACAGAGTTGTTCCTTCCACAAAAGAGATGTCAAAGGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCCAGACAAACTGGTCTCATGAATGTAAGGTTCCAGCAATGTCTTGTGAAGATGTGGAGACCAAGCCTGAAGTTTCAGGGTCGACTGAACAGGAGAAAGTTTTGAATGTAGATAAGTCGGCTCAGACTATATATGAAGGACAGGGAGGGTGTTTGAAAAAGCGAAGAGGGAAGAGAAAGAGGAAGGATTGTGGCAGAAATATTAATGAAGCTAGTGTAAGAGAAAGTGATTTATCAGCTGATGTGTGTAAAGAAAGTTCTACCAGTAACTGTGACGAGATTGAAAAATCTTCTGGTGTGAATGAGGCAAAAGCAAACTTGAAGAAGGATGAAAAAAAAGATTTGATGGAGCTCTTGGATTCTTTTTTGTTAGTTCAAGGTGCTTCTGCCTTCTGTCGTAGGCATGATAGCCAGAAGCGAGGAAGATACAAGAAAACGATCCGGCAACACATGGACTTTGACACTATAAGGTCTAGAATCAACAATGGAACAATCAAGTCAATGATGGAACTTATAAGAGACTTGCTACTATTGACCAACAATGCTATATTATTCTACTCCAAGATCACTCGTGAATACAAAATTGCTCTAAAACTGAGAGACCTTGCCATGAAAACATCGGCAGAGAAACTTAAGTTTTTGAGTAGCAGCAATGCCTCAACCTCATCACCTGTGCCTGATCCTCAAGTGAAAGTAAGAAGCGTGACCACATCACCTGTGCATGATCCTCCAGTTAAAGCCAGAAGCATTAAAACATCACCTGTGCATGATCCTTCAGTGAAAGTCAGAAGCATGCGCCCCGGTAACCGCAAGATTGTTGCAAAGGTAGCTGGTGGCAGCACCTCTGCCGAAAGGGTCTCACTTAGAGCTAAGAAAGAAGCTAATAAAGTAGAATCTCCATCTTCAGTGGAATCCTTACCCATCAAGAAGGCCTTTGGTGGTAGAACAAAAAAAGTTGCACGTGAAAGTGCAGGTCAGAGACACGCAACACCAAGGAAGGGAAAGAAAAAAGGGAAAGCAAAGTGA 1485 0.4377 MGAELVVTWSTWEELLLGGAILRHGTRDWTVVAAELKTRTVSPFIFTPEVCKAKYEEFRQQYSGCMAWFEELKKKRVAELKRDLELSEELIGSLELKLESLKTGMDEKRADCHVDDGSVGPELHVSLQKLDRVVPSTKEMSKDGLSAGSFTHETQTNWSHECKVPAMSCEDVETKPEVSGSTEQEKVLNVDKSAQTIYEGQGGCLKKRRGKRKRKDCGRNINEASVRESDLSADVCKESSTSNCDEIEKSSGVNEAKANLKKDEKKDLMELLDSFLLVQGASAFCRRHDSQKRGRYKKTIRQHMDFDTIRSRINNGTIKSMMELIRDLLLLTNNAILFYSKITREYKIALKLRDLAMKTSAEKLKFLSSSNASTSSPVPDPQVKVRSVTTSPVHDPPVKARSIKTSPVHDPSVKVRSMRPGNRKIVAKVAGGSTSAERVSLRAKKEANKVESPSSVESLPIKKAFGGRTKKVARESAGQRHATPRKGKKKGKAK* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02986 494 Coils Coil 77 97 - -
Lapu3g02986 494 SUPERFAMILY Bromodomain 256 364 IPR036427 GO:0005515
Lapu3g02986 494 CDD SANT 8 58 IPR001005 -
Lapu3g02986 494 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 8 492 - -
Lapu3g02986 494 SMART bromo_6 261 365 IPR001487 GO:0005515
Lapu3g02986 494 MobiDBLite consensus disorder prediction 368 416 - -
Lapu3g02986 494 MobiDBLite consensus disorder prediction 368 389 - -
Lapu3g02986 494 MobiDBLite consensus disorder prediction 468 482 - -
Lapu3g02986 494 Gene3D - 229 374 IPR036427 GO:0005515
Lapu3g02986 494 CDD Bromodomain 264 358 - -
Lapu3g02986 494 ProSiteProfiles Bromodomain profile. 284 346 IPR001487 GO:0005515
Lapu3g02986 494 Pfam Bromodomain 271 350 IPR001487 GO:0005515
Lapu3g02986 494 MobiDBLite consensus disorder prediction 429 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02986 Lapu-Chr3 53006649 53011916 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g02986 Bromodomain 9.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02986 - - pvu:PHAVU_002G224000g 860.522