Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02961 ATGCGGAGTTTCACTTTCTTCGAACGAGTTTCTAGAGCTTTTCGTGACCATGGTTCCAACTTCAAGCTTGTGCTTCTCTGCACCACCGTAAGTGGTGGAGGGCTTCTGGCTTACGGAGAGGCTGTAGGGGCATCTGAAGCGGCGGTGCCGGAGAAGAAAAAGGTGGTGGTGCTGGGAACAGGGTGGGCTGGCACGACTTTCTTGAAGAATCTGAACAATCCGAGATATGAGGTTCACGTGGTCTCGCCTCGCAATTACTTTGCATTCACTCCTTTGCTGCCTAGTGTTACCTGCGGCACCGTCGAAGCCCGCAGCATCGTCGAACCTGTCCGCAATATTTTCCGGAAGAAAAACGTGGACGTTCAATTCAGTGAAGCAGAATGTCTCAAGATTGACGCAGCAAACAGGAAGGTATACTGTCGATCTAATATAAGTAATAATTTAAACGAGAAAGAAGAATTTGTGGTGGACTATGACTATCTAATCATAGCCGTAGGAGCAAATGTCAACACATTTAATACTCCTGGAGTGACGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCGCAGAAGATTAGAAGAACCGTTATTGACTGCTTCGAGAGAGCAAGTTTGCCAAGTGTAAGTGAGGAAGAAAAGAGGAGAATTCTTCACTTCGCTATTGTTGGAGGTGGTCCAACTGGAGTTGAGTTTGCAGCCTCACTACATGACTTTGTCACTGAGGATTTGGTCAAGTTATATCCTGGGATAAAAGATTTAGTTAAAATTACGGTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTTGGAAGAGATGGTATTGATGTCAAAACAGGATCCATGGTTGTGAAGGTTTCTGATAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGAAATTACTACAATTCCATATGGAATGGCTGTTTGGTCAACTGGTATTGGCACTCGTCCATTTATAAAAGATTTTATGTCACAGATTGGTCAGACTAACAGAAGGGCTGTAGCTACAGATGAGTGGTTGAGAGTTGAATCAACTAATGACGTGTATGCACTTGGTGACTGCGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCTGACAAGGACAATTCAGGAACTCTTACTGTCAAGGAATTTCAGGAGGTATTGGATGACATCTGTGAGAGATACCCTCAGGTGGAGCTATATCTAAAGAATAAACAGATGCACGACCTTGCTGATTTGTTGAAAGAGTCCAAGGGAGATGTTGAAAAAGAATCTATTGAACTGAATATCGAAGAACTCAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTGGCCCAGTGCTTTAATCGGATGGAAGAGTGTGAGAAAAATCCGGAGGGTCCTATCAGGTTCAGGGAAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTCTAGGAGGAGAGCAAACCGCTGCGCAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCACTCAATGGCTGTGGTATTCTGTTTATGCAAGCAAGCAAGTAAGCTGGCGCACAAGAGCGTTAGTAGTATCAGACTGGACAAGACGCTTTATCTTTGGGAGGGATTCAAGTCAAATCTGA 1737 0.4404 MRSFTFFERVSRAFRDHGSNFKLVLLCTTVSGGGLLAYGEAVGASEAAVPEKKKVVVLGTGWAGTTFLKNLNNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKNVDVQFSEAECLKIDAANRKVYCRSNISNNLNEKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKRRILHFAIVGGGPTGVEFAASLHDFVTEDLVKLYPGIKDLVKITVLEAGDHILSMFDKRITAFAEDKFGRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIKDFMSQIGQTNRRAVATDEWLRVESTNDVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVELYLKNKQMHDLADLLKESKGDVEKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAQCFNRMEECEKNPEGPIRFREEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSTQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02961 578 SUPERFAMILY EF-hand 332 465 IPR011992 -
Lapu3g02961 578 SUPERFAMILY FAD/NAD(P)-binding domain 214 373 IPR036188 -
Lapu3g02961 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 405 - -
Lapu3g02961 578 SMART efh_1 380 408 IPR002048 GO:0005509
Lapu3g02961 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Lapu3g02961 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Lapu3g02961 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Lapu3g02961 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 348 370 - -
Lapu3g02961 578 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Lapu3g02961 578 Coils Coil 440 460 - -
Lapu3g02961 578 PANTHER NADH DEHYDROGENASE 47 578 IPR045024 GO:0003954|GO:0006116
Lapu3g02961 578 Gene3D - 418 577 - -
Lapu3g02961 578 Gene3D - 44 417 - -
Lapu3g02961 578 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Lapu3g02961 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 577 - -
Lapu3g02961 578 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Lapu3g02961 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02961 Lapu-Chr3 52739549 52744638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02961 1 578 EF-hand Containing Proteins AT4G05020 70.305 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02961 K03885 - gmx:100809915 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02961 3 52739549 52744638 Lapu6g01192 6 11786130 11792508 PCT