Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02959 ATGGGTGATGGAGAAGAATTCGCCGGAGCTTCGGGTCTGCGGCGAGCGGTGGAGCTCATCCTTGCCGTGCTCTCTCTCTCGCACTCGATTCGTGTCTTCGCCGGGAAATGGCAACTCATTCGTAACAAGCTGGAGGAGCTTCACGGCGGTTTAGTCGCCGCGGAGAATTGCGACTCCCGCGAGAGCCCGTCGCTTTCGCGGCTGGCGGTGGCGGTGGCGGCCACCGCAACGGAGTGCCACGATCTGTGTCGGCGCTGCGTGGATGTTTCCTACAGCGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGATGCGCACGCGAGGAAACTCTCTGAGATATACAAAACGGGGATTTTAACAAATGGGTTCGCACTCGTTGTGTCAAAGCCGAGTCTTGGCGCTTCGAAAGAGGACATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGATTGGAGATTTGGGGATGAAACGACAAGCGTTGCGGAACCTTCTAGAAGTTGTGTTGGAGGATGAGAAGTATGTGAAGGTGATCGTTGACGTGGGTGACGTGGTTCATTTGTTGGTGGGGTTTTTGGGTTCTAATGGGGTGGAAATCCAGGAGGAGAGTGCTAAGGTTGTTTCTGTGGTTGCTGGGTTTGATTCTTACAAAGGGGTTTTGGTTGGGGCGGGGGTGATTGCTCCTTTGGTTAAGGTTCTGGATTGTGGGAGTGATTTGGGGAAGGTTGCGGCTGCGAGGTGTTTGGTGAAGTTGACTGAAAATTCGGACAATGCTTGGTGTGTTTCGGCTCATGGGGGGGTTAGTGTGTTGTTGAAGATTTGTGGTGGTGCTGATTGTGGAGGTGATTTGGTTGCACCTGCTTGCGGGGTGTTGCGGAATCTCGTTGGGGTTGAGGAGATTAGGAGGTTTATGGTTGATGAGGGTGCTGTGTTAACTTTCATTAGGCTTGTGAGGTCCAAGGAGGAAGCGATTCAGGTGAATTCGATTGGGTTTATTTTGAGTATTGCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGATCAGAGAAGGAGGAGTTCGTGCTTTGTTGCGTGTTTTGGATCCTAAGTGGTCTTATTCTTGTAAAACTAGGGAGGTAGCAATGAGGGCTGTTGAGGATTTGTGTTTTTGTTCAACTAGTTCTGTGGGTGTTTTGATGAGTTATGGCTTTGTGGATCAGCTGGCATATTATATTCGAAATGGGGAGGTTTCGATTCAGGAGTTGGCATTGAAAGTGGCGTTTAGGTTGTGTGGAACATCTGAGGAGGCTAAGAAAGCAATGGGAGATGCAGGGCTTATGCCAGAGTTTGTTAAGTTTCTTAATGCAAAGTCCTTTGAGGTTCGAGAAATGGCAGCTGAGGCACTCTCTGGCATGGTTATGGTGCCTAGAAATAGAAAGAGATTCGTGCAGGATGATCATAATATTGCCCTTCTTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCTGGTAATAAAAAGTTCTTAATCTCTATATTAATGTCCTTAACGAGTTGCACTAGTGGGAGGAAAAAGATTGTTAGTTCCGGATATGCCAAAAACATAGAAAAACTTGCGGACGCTGAAGTTTCTTCTGACGCCAAGAGACTTGTCAAGAAGCTATCTACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCGTGA 1704 0.4906 MGDGEEFAGASGLRRAVELILAVLSLSHSIRVFAGKWQLIRNKLEELHGGLVAAENCDSRESPSLSRLAVAVAATATECHDLCRRCVDVSYSGKLLMQSDLDVAFAKLDAHARKLSEIYKTGILTNGFALVVSKPSLGASKEDMRFYVRDLTTRMKIGDLGMKRQALRNLLEVVLEDEKYVKVIVDVGDVVHLLVGFLGSNGVEIQEESAKVVSVVAGFDSYKGVLVGAGVIAPLVKVLDCGSDLGKVAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGADCGGDLVAPACGVLRNLVGVEEIRRFMVDEGAVLTFIRLVRSKEEAIQVNSIGFILSIASGDELVRQMVIREGGVRALLRVLDPKWSYSCKTREVAMRAVEDLCFCSTSSVGVLMSYGFVDQLAYYIRNGEVSIQELALKVAFRLCGTSEEAKKAMGDAGLMPEFVKFLNAKSFEVREMAAEALSGMVMVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCTSGRKKIVSSGYAKNIEKLADAEVSSDAKRLVKKLSTNRFRSMLSGIWHS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02959 567 Pfam Armadillo/beta-catenin-like repeat 433 468 IPR000225 GO:0005515
Lapu3g02959 567 SUPERFAMILY ARM repeat 138 536 IPR016024 -
Lapu3g02959 567 Gene3D - 147 556 IPR011989 -
Lapu3g02959 567 SMART arm_5 177 218 IPR000225 GO:0005515
Lapu3g02959 567 SMART arm_5 303 343 IPR000225 GO:0005515
Lapu3g02959 567 SMART arm_5 260 302 IPR000225 GO:0005515
Lapu3g02959 567 SMART arm_5 345 388 IPR000225 GO:0005515
Lapu3g02959 567 SMART arm_5 219 259 IPR000225 GO:0005515
Lapu3g02959 567 SMART arm_5 432 472 IPR000225 GO:0005515
Lapu3g02959 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 315 IPR000225 GO:0005515
Lapu3g02959 567 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02959 Lapu-Chr3 52695398 52697868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02959 159 362 U-box Gene Family AT2G23140 25.980 2.97e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02959 - - gmx:100809382 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02959 3 52695398 52697868 Lapu6g01191 6 11770990 11772968 PCT