LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g02955	ATGACGAAAAAACCAAAGACGGAGGGAACGGAGGAGCCTCTGCCAGACCACCTCCGGTGCGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGACAATCTGAAACTGTGCGAGATTCACTACCTCCAAGGTCGCCATCGGCAGTACAAGGAGAAGGTTCCGGAGTCCTTGAAGCTTCACCGGAAACGCAAGACGAGTGATGAGGAACCTAATGCAGTGGACAATGTTGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAGGCTTTTGGAGGGTTCCGAGGCTCTGGTGGTGGCGGCTCCTTCTCCCACGAAGAAGAAGGCGCAGAAGCAGGGCGATATGCAGTTGGAGCTCATAAGGATGGTTCTCAAGAGAGAGGCGGAGAAGAAGAACAAAGGCAACAAGAGCAAGAAGAAGAATAAGAACAAGAACAAGAAGAAGAAAAAAGAGGAGGAAGAGGAAGTGTGTTTCGGTGAAGGGGAGTTGAGGAGGGAATTGCCTAATGGTGTGATGGAAATCTCTCCTGCTTCACCCACTCGTGATTACAACAATGTGGCTTCGCATTGTGACGTGAAAGTTGGTGTGGATTCTAAAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGTGGGCAAGTTGCAGATTGTGCCGTATGGATCAAACTTGAAGAAGGGTACCAAGGGTAAGAGGAAGAAGTGTCACTGGTGCCAGAGAAGCGAGTCTTGCAATCTCATCCAGTGTTCGGGCTGTGAGAGAGAGTTTTTCTGCGTGGATTGTATTAAAGAGCGGTATTTGGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAACTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTAACTGGTAAGAGCAGAGTTGACAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCATATAAGTGAAGATCAGAATAATGATCTAGAAACAGAAGCAAAAGTTAAAGGAAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAGACACCCATTTTGGATCTCCATAGAAGCTGTCCGAGTTGTTCATATAGCCTATGTTCAAGTTGTTGTCAGGAATTAAGTCAAGGAAAAGATTCTGGAGAAATTAATTTGTCTACATTCAATCGACCTGATAAAATGAAAACTAGCAGTGCTAGTGAGAGCCCGACTTTGGATGAGAAGGCCATATCTAGTGGCAATTTAACTGATACTTCAATATTGCCTGAGAGGACAAATTGTAATGGCATTGATGGTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAATGGCCACCTTGAGTTGAGATCTGTTTTCCCCTTCAATTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGCTGCTCATTGTGTTTTGACACCGATCACAATACAAACAGATACAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCGACAGTGTTGGACATCACTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTCGTCCGAGATGTGCTCCAAAGTACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAACATTACGAGATATGAGAATAATAAAAACGTACTTGAATCTTGTTTGGATTGGTGGGAGGTTGAAATTAACATTAGGCAGCACTTTACTGGGTCTGTAAAACGCCGTCCTCAAAGAAATACTTGGAATGAGATGCTCAAACTAAAAGGGTGGCTTTCTTCCGAAATATTCAAAAAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGAGGCTCTACCTGTTCAAGAATACATGCATCCCTTGTCAGGCCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGACATTGGACCATATGTCTATATTTCTTATGGCTCTGCTGACGAAGAAACTGATTCTGTGACAACTCTCTGCTATGACCCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACGAAAATAAGAAAATTACTGAAAAAACACAAAACTCTCTGTCAAATGAAGACTATTGCTACTGAGGAGCCACAGGAACAAAAGGTGAATGGAATGAAATTATTGCATGTTGAAGAAAGGGAGCAAAGAGGCCTGCAGAGTATGGCTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACGTCTTGCATCTCAACTGAAGCTAAAAGTGTTTCTAGTCAGAGCATGGAAAGCAATTTTTCCCAGAATGGAGAATGTGATTTCTTTTCTGAATCTGATTCCGGGCGCACTTTACTTCTCCTTGGGACTGTTCAAACCACTGAAATCTCTAAACAGGACATTCCTAGAAAACCCTTTGAAAGCTCAAAAAGGCATAAAAATAAGTTTACTGAGCATTTGGGTGCCCATTGGGATGTCTTTCGTAGACAAGATGTACCAAAGCTCATAGAATACCTTAAAAGACACTGTGATGAATTTTCTTATACCCGTGACTGTCACAAGAAGATGGTTCACCCGATTCTAGATCAAAACATTTTTCTTGATAGTACTCACAAAATGAGACTAAAAGAGGAATTTAAGATTGAACCATGGACTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCGCCTGAAAATGTTACCGAGGGTATCCAGTTGGTTGATGAGGTCCGACTATTGCCTGAAGACCATAAAGCAAAAGCAGACATGCTTGAGGTAAAGAAAATGGCGCTTCATAGTATGAATACAGCAATTAAAGAAGTACGTCAGCTTACAAGCAAAACATGA	3090	0.4236	MTKKPKTEGTEEPLPDHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRHRQYKEKVPESLKLHRKRKTSDEEPNAVDNVESRARRTSRIVKKKRRLLEGSEALVVAAPSPTKKKAQKQGDMQLELIRMVLKREAEKKNKGNKSKKKNKNKNKKKKKEEEEEVCFGEGELRRELPNGVMEISPASPTRDYNNVASHCDVKVGVDSKTVTPRYFRSKNVDRVPVGKLQIVPYGSNLKKGTKGKRKKCHWCQRSESCNLIQCSGCEREFFCVDCIKERYLDTQNEVKKACPVCRGTCTCKDCSASQCKDSESKEYLTGKSRVDRILHFHYLICMLLPVLKHISEDQNNDLETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELSQGKDSGEINLSTFNRPDKMKTSSASESPTLDEKAISSGNLTDTSILPERTNCNGIDGLSCPPTELGGCGNGHLELRSVFPFNWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQEAALREDSNDNYLFCPTVLDITGDNFEHFQKHWGKGHPIVVRDVLQSTSNLSWDPLIMFCTYLEQNITRYENNKNVLESCLDWWEVEINIRQHFTGSVKRRPQRNTWNEMLKLKGWLSSEIFKKQFPAHFAEVIEALPVQEYMHPLSGLLNLAANLPHGSAKHDIGPYVYISYGSADEETDSVTTLCYDPYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMKTIATEEPQEQKVNGMKLLHVEEREQRGLQSMAEEGMNFFRRVNRTSCISTEAKSVSSQSMESNFSQNGECDFFSESDSGRTLLLLGTVQTTEISKQDIPRKPFESSKRHKNKFTEHLGAHWDVFRRQDVPKLIEYLKRHCDEFSYTRDCHKKMVHPILDQNIFLDSTHKMRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIQLVDEVRLLPEDHKAKADMLEVKKMALHSMNTAIKEVRQLTSKT*	1030

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g02955	1029	Pfam	WRC	15	56	IPR014977	-
	Lapu3g02955	1029	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	16	1028	IPR045109	GO:0032454\|GO:0033169
	Lapu3g02955	1029	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lapu3g02955	1029	FunFam	Uncharacterized protein	548	791	-	-
	Lapu3g02955	1029	ProSiteProfiles	JmjC domain profile.	679	992	IPR003347	-
	Lapu3g02955	1029	ProSiteProfiles	Zinc finger RING-type profile.	246	292	IPR001841	-
	Lapu3g02955	1029	SMART	cupin_9	660	992	IPR003347	-
	Lapu3g02955	1029	MobiDBLite	consensus disorder prediction	59	86	-	-
	Lapu3g02955	1029	Gene3D	Cupin	552	1001	-	-
	Lapu3g02955	1029	Pfam	JmjC domain, hydroxylase	878	970	IPR003347	-
	Lapu3g02955	1029	ProSiteProfiles	WRC domain profile.	14	60	IPR014977	-
	Lapu3g02955	1029	SUPERFAMILY	Clavaminate synthase-like	559	1015	-	-
	Lapu3g02955	1029	MobiDBLite	consensus disorder prediction	139	153	-	-
	Lapu3g02955	1029	Coils	Coil	132	163	-	-
	Lapu3g02955	1029	MobiDBLite	consensus disorder prediction	134	162	-	-
	Lapu3g02955	1029	MobiDBLite	consensus disorder prediction	419	441	-	-
	Lapu3g02955	1029	MobiDBLite	consensus disorder prediction	59	87	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g02955	Lapu-Chr3	52622542	52628996	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Lapu3g02955		JmjC	1.7e-09	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g02955	K15601		-	gmx:100810673	1731.07