Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02952 ATGGGCACGACAACTGTAGCCAAATATACAAATTTTCTGCTCCTTTTATTCTTTCTCTTATGTTTTCTTACCTTGTTCTCTCATGCTGCCAATTCCCTCACAGGAGAAAAAGAAATCAAAGACAACAATGGTACTGACAATTTGGTGTCGGAAGATCTCAGCTTTGAGATGGGTTTCTTCGGTTTTGATAACTCTTCAAGATACGTTGGGATTTGGTACCACGAGTTTCCTAGTTCAGCTTCAGCATTCATATGGGTAGCAAATAGAGAGAAGCCCATCAAAGGAAGAGGAGGTTCTATCAAAATCAAAGGTGACGGAAACTTGGTTGTTCTCGATGGAGAGAACAACGAGGTGTGGTCAACTAACAAGTCAATATCAAGGAACAACACAAAAGCTGTTCTTCGTGATGATGGGAACCTTGTTCTTTCAGAAGAATCAGAACATGAGAAAGTCGTGTGGCAAAGCTTTGAGAACCCAACTGATACCTTCGTGCCAGGTATGTCACTGCCAGCCAGTGCTGGAATGGGTATGTTCAGGTCATGGAAATCAGCAACGGATCCTTCACCGGGAAACTACTCAATGGGGGTTGACTCCGAGGGATCAACGCTACAGATTTTGATTTTGGATGGGGAGAAAAAAAGGTGGAGAAGTGGGTATTGGGATGGTAGAGTATTCACTGGTGTGTCCAATATGACAGGAAGCTCTCTCTTTGGTTTTAAATTTGATGGACAACAATTTACATATACATGGAATGACCCTGAAAAGGTGAGGTTTCAGATAACGTGGGATGGGTTTGAAAAGAAGTTCATATGGGATGCAGATGAGAAACAATGGAATAATACACAACATGAGCCTTATAATAAGTGTGAGCGTTATAATCTTTGTGGCAGTTTTGCAGTGTGTGATATCTCTAAGGCAGTTGTTTGTAGTTGCATGCACGGGTTTCAATCAGGGGAATGGAGCGAGTGGAATGGGGGGAATTCAGGGGGTTGTAAGAGGAGGACTCCACTGAAGGCTGAGAGAAATAGTTCTGGAAGTGAGGTTAGTGTTGGAGAAGATGATTTCTTCGTTCAAAGGTGTACAAAGTTGCCAGATTTTGCACGTTTGGAGAGTCCTTTAGACGACGGGGAATGTCAGCGGTTTTGTCTGCAGAATAGTTCTTGTACTGCGTATTCATATACTATTGGAATTGGGTGCATGATTTGGTATGTGGATTTGGTTGATATTCAACACACTGAAAATAATCTAGGAAATGTGGTCAACATCCGTCTAGCTCATTCTGAATTAGAAGCAGGTGATGGGAAAAAGACAAAAATTTGGATAATAATAGTACCGGTTGTGGTGGGGCTGATCTGCCTTGGAGTCTTTGTATTGCTGGTATGGAGGATTAAGAGAAAACGTCAAGTTTCCTCAGCTTCAGCTGACAACAATGGTGATTTTCCAGTCTTTGGACTAACGAGGAGTACAGACTTATCAGCAGATTTTTCAGGATCAACTGACTTAGGTTTGGAAGGGAATAAGGCAGAACTTCCATTGTTCACTTTTAGCTTCATTGCAGCTGCAACAAACAATTTCTCAGAAGGAAATAAGCTGGGACAAGGGGGATTTGGTCCTGTATACAGGGGGAAGCTTCCAGGGGGCGAGGAAATAGCTGTTAAGAGGCTTTCAAGGAAGTCTAGTCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTACAACATAGAAATCTGGTTAGACTACTGGGATGTTCCATTCAGGGAGAAGAAAAAATACTGGTATATGAGTACTTGCCAAACAAAAGCTTGGACTGTTTTTTATTTGATCCGGTGAAGCAAACACAATTAGACTGGACAAAGCGCTTTGAAATAATTGAGGGCATTGCAAGAGGGCTACTTTACCTGCACCAGGATTCAAGACTACGAATAATTCATCGGGATCTAAAAGCAAGTAACATTCTATTAGATGAAAGCATGAATCCAAAAATTTCAGACTTTGGTTTAGCCAGAATATTTGGAGGAAACCAAAATGAAGGCAACACCAACAGAGTGGTTGGTACATATGGTTATATGTCACCAGAATATGCAATGGAAGGTCTATTTTCAGTTAAATCTGATGTCTATAGTTTTGGTGTATTGCTACTAGAGATTATGAGTGGCCGCAGGAACACTAGCTTTCGCAACACAGACGATTCAAGTCTCATAGGATATGCCTGGCACCTTTGGAGTGAGCAGAGGGTAATGGAGCTTCTTGATTCTTCCATTGGTGATTCAACTCCAAAGAGTAAAGCATTGAGATACATACACATAGGGATGTTATGCGTGCAAGATTCAGCATCTCGTAGACCAAATATGTCCTCTGTATTGTTAATGATGGGAAGTGAAGCCACAACTCTTCCTTTGCCTAAACAACCTTTGCTTACTACTGCTTCCACCAGGAAATTTGAGGACGGAGATCAATCTTATAGCGAAGGCCTTGACATGTCAAATGATTTGACAGTTACAATGGTGACAGGAAGATAG 2532 0.4151 MGTTTVAKYTNFLLLLFFLLCFLTLFSHAANSLTGEKEIKDNNGTDNLVSEDLSFEMGFFGFDNSSRYVGIWYHEFPSSASAFIWVANREKPIKGRGGSIKIKGDGNLVVLDGENNEVWSTNKSISRNNTKAVLRDDGNLVLSEESEHEKVVWQSFENPTDTFVPGMSLPASAGMGMFRSWKSATDPSPGNYSMGVDSEGSTLQILILDGEKKRWRSGYWDGRVFTGVSNMTGSSLFGFKFDGQQFTYTWNDPEKVRFQITWDGFEKKFIWDADEKQWNNTQHEPYNKCERYNLCGSFAVCDISKAVVCSCMHGFQSGEWSEWNGGNSGGCKRRTPLKAERNSSGSEVSVGEDDFFVQRCTKLPDFARLESPLDDGECQRFCLQNSSCTAYSYTIGIGCMIWYVDLVDIQHTENNLGNVVNIRLAHSELEAGDGKKTKIWIIIVPVVVGLICLGVFVLLVWRIKRKRQVSSASADNNGDFPVFGLTRSTDLSADFSGSTDLGLEGNKAELPLFTFSFIAAATNNFSEGNKLGQGGFGPVYRGKLPGGEEIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKILVYEYLPNKSLDCFLFDPVKQTQLDWTKRFEIIEGIARGLLYLHQDSRLRIIHRDLKASNILLDESMNPKISDFGLARIFGGNQNEGNTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIMSGRRNTSFRNTDDSSLIGYAWHLWSEQRVMELLDSSIGDSTPKSKALRYIHIGMLCVQDSASRRPNMSSVLLMMGSEATTLPLPKQPLLTTASTRKFEDGDQSYSEGLDMSNDLTVTMVTGR* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02952 843 Pfam PAN-like domain 351 409 IPR003609 -
Lapu3g02952 843 ProSiteProfiles PAN/Apple domain profile. 350 425 IPR003609 -
Lapu3g02952 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 803 - -
Lapu3g02952 843 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Lapu3g02952 843 Pfam S-locus glycoprotein domain 215 317 IPR000858 GO:0048544
Lapu3g02952 843 Gene3D Phosphorylase Kinase; domain 1 496 600 - -
Lapu3g02952 843 ProSiteProfiles Protein kinase domain profile. 525 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02952 843 SMART serkin_6 525 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02952 843 SMART blect_4 39 159 IPR001480 -
Lapu3g02952 843 Pfam D-mannose binding lectin 83 177 IPR001480 -
Lapu3g02952 843 CDD STKc_IRAK 531 795 - -
Lapu3g02952 843 Pfam Protein tyrosine and serine/threonine kinase 528 792 IPR001245 GO:0004672|GO:0006468
Lapu3g02952 843 SUPERFAMILY Protein kinase-like (PK-like) 509 806 IPR011009 -
Lapu3g02952 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 187 IPR036426 -
Lapu3g02952 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 493 600 - -
Lapu3g02952 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 786 - -
Lapu3g02952 843 PIRSF SRK 3 843 IPR024171 GO:0004674
Lapu3g02952 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 156 - -
Lapu3g02952 843 CDD B_lectin 48 159 IPR001480 -
Lapu3g02952 843 Gene3D - 25 156 IPR036426 -
Lapu3g02952 843 Gene3D Transferase(Phosphotransferase) domain 1 601 802 - -
Lapu3g02952 843 SMART ntp_6 350 424 IPR003609 -
Lapu3g02952 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Lapu3g02952 843 CDD PAN_AP_plant 352 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02952 Lapu-Chr3 52586814 52590553 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02952 513 838 Receptor kinase-like Gene Family AT4G11530 59.459 1.54e-131 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu3g02952 PK_Tyr_Ser-Thr 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02952 - - vum:124821534 1461.82