Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02949 ATGGGAGGTTCCACTAACCTCTTCACATTCTTCCTTTTATGGTTCTCTTTTTTCACTCCCTTCCCCACACTTTCCGTCTCCACAGACACCTTAACAAAATCCCAATCCCTCCAAACCAACCAAACCCTTCTCTCCCCAAATGCAATTTTCGAGCTGGGTTTCTTTTCCTACTCCAATTCCACCTGGTACTTGGCCATATGGTACAAAACCATCCACCACGATGTTAAAACTGTCGTGTGGGTGGCAAATCGTGACACCCCACTTCAGAACTCCATCGGCTTTCTCAAAATAGACGACCAGGGAAACCTCCTCATTGTAAACCAATCCCAGAAACCCGTGTGGTCCTCTAACCACACCACCCCGATAACCAACCCAGTTCTTCAGCTCTTGGATTCCGGGAACCTAGTTCTTCGAGAAGAAAACGAGAATGACCCCACAAGGTTCCTCTGGCAGAGCTTTGATTACCCGACAGATACCTTGTTACCCGGCATGAAACTAGGTTGGAACTTCGACACGGGCGTGGAGAAACACATAACCTCCTGGAGGGTCACAAACGAAGACCCTTCAAGCGGGGATTTTTCCTTCAAACTAGATTACCGTGGCCTCCCGGAAATATTCCTCTGGAACAAGGACCAGAGAATCTACCGAAGTGGACCTTGGAATGGCGACAGATTCAGCGGGGTACCCGAGATGCAACCCGTCACTGATTCCATTAAGTTCACGTTCTTTGAGGATCAACACCAAGTATACTACACATTCTCAATTGCGAACAACTCCTTGTTCTCGAGACTCTCTGTGAACTCAGCTGGGGAACTCCAACGCCTCACGTGGATACAAAGCACCCAGGTTTGGAACAGATTCTGGTACGCTCCGAAAGACCAATGCGACAGCTACCGAGAGTGCGGTCCCTACGGGGTCTGTGACTCCAACGCGTCACCGGTGTGTCAGTGTATCAGAGGGTTCCGCCCCAGGAACCAGCAGGCGTGGAATTTGCGAGATGGGTCTGATGGGTGTGTGAGGAACACGGGATTGGCGTGTGGAAGTGACAGGTTTTTACATATGCAGAAGGTGAAGTTGCCAGAGACAACGTCGGTGTTCGTGAACAGGAGCATGGGGTTGGTGGAGTGTGGGGATTTGTGCCAGAGGAATTGTTCGTGTACTGCTTATGCCAATATTGAGATTAGGAATGGAGGGAGTGGGTGCGTGATGTGGGTTGGGGAGCTCTTGGACGTTCGAAGCTATCCTTCGGGAGGCCAAGATCTTTATGTCAGATTGGCGGCTTCTGATGTAGGGGTTGAAGGTGGTTCTGGCAAGACAAGTGATACATTAAAAGATATAGGCATTGTAGTTGGTGTTGCAGCTGTTATACTATTGGCATTGGGCATCTTTATCTTGTGGAAGAAGAGGAAATTGCAACGCATATTGAAATGGAAGACAGAAAAAAGAGGTTTTTCAGAAAAAAGTCAGGATTTGTTAATGAACGAGGGAGTGTTATCGAGTAACAGAGAACAGTACGGTGAAAGTAACATGGACGATCTAGAGTTGCCATTGTTTGATTTTCACACCATAACAATGGCTACAAACAACTTCTCTGAAGAAAATAAGCTTGGACAAGGAGGCTTCGGTAGTGTTTATAAAGGCAGGTTGAAGGAGGGTCAGGACATTGCTGTGAAGAGATTATCAAAAAATTCTGGCCAAGGAATTGAGGAGTTCAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTAGTTCGTTTGCTTGGTTGCAGCATTCAGATGGATGAGAAGATGCTGATCGTAAGTGGGAAAAAAAACAGAGGATTCTATTACGCAAACAAAGAACTGAATCTTCTGGGGCATGTATGTGCTACAGTTGCCGCGTGGAAGCTGTGGATAGAAGGAAATGCGTTGGAACTGAGTGATTCGTCTATTGACACATCATATTCAGCATCAGAAGTTCATAGATGCATACAAGTGGGTCTCTTGTGCGTGCAAGAGCGTGCTGAAGATAGGCCAACAATGTCTTCAGTGGTGTTGATGCTGAGTAGTGATACTGCATCAATGTCACAACCCAAAAACCCTGGGTTTTGTCTAGGAAGAAATCCTGTGGAAACTGAATCTTCTTCAAGTAAACAAGAAGAATCATGCACTGTGAACCAAGTCACTGTCACAATGCTAGATGCTAGGTAG 2199 0.4648 MGGSTNLFTFFLLWFSFFTPFPTLSVSTDTLTKSQSLQTNQTLLSPNAIFELGFFSYSNSTWYLAIWYKTIHHDVKTVVWVANRDTPLQNSIGFLKIDDQGNLLIVNQSQKPVWSSNHTTPITNPVLQLLDSGNLVLREENENDPTRFLWQSFDYPTDTLLPGMKLGWNFDTGVEKHITSWRVTNEDPSSGDFSFKLDYRGLPEIFLWNKDQRIYRSGPWNGDRFSGVPEMQPVTDSIKFTFFEDQHQVYYTFSIANNSLFSRLSVNSAGELQRLTWIQSTQVWNRFWYAPKDQCDSYRECGPYGVCDSNASPVCQCIRGFRPRNQQAWNLRDGSDGCVRNTGLACGSDRFLHMQKVKLPETTSVFVNRSMGLVECGDLCQRNCSCTAYANIEIRNGGSGCVMWVGELLDVRSYPSGGQDLYVRLAASDVGVEGGSGKTSDTLKDIGIVVGVAAVILLALGIFILWKKRKLQRILKWKTEKRGFSEKSQDLLMNEGVLSSNREQYGESNMDDLELPLFDFHTITMATNNFSEENKLGQGGFGSVYKGRLKEGQDIAVKRLSKNSGQGIEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLIVSGKKNRGFYYANKELNLLGHVCATVAAWKLWIEGNALELSDSSIDTSYSASEVHRCIQVGLLCVQERAEDRPTMSSVVLMLSSDTASMSQPKNPGFCLGRNPVETESSSSKQEESCTVNQVTVTMLDAR* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02949 732 CDD PAN_AP_plant 344 426 - -
Lapu3g02949 732 Pfam Domain of unknown function (DUF3403) 686 732 IPR021820 GO:0004674
Lapu3g02949 732 SMART tyrkin_6 530 684 IPR020635 GO:0004713|GO:0006468
Lapu3g02949 732 Gene3D Transferase(Phosphotransferase) domain 1 604 698 - -
Lapu3g02949 732 Pfam Protein tyrosine and serine/threonine kinase 533 603 IPR001245 GO:0004672|GO:0006468
Lapu3g02949 732 PIRSF SRK 602 732 IPR024171 GO:0004674
Lapu3g02949 732 PIRSF SRK 4 602 IPR024171 GO:0004674
Lapu3g02949 732 Pfam PAN-like domain 346 411 IPR003609 -
Lapu3g02949 732 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Lapu3g02949 732 SMART ntp_6 346 425 IPR003609 -
Lapu3g02949 732 ProSiteProfiles Protein kinase domain profile. 530 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02949 732 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Lapu3g02949 732 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 496 604 - -
Lapu3g02949 732 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 153 - -
Lapu3g02949 732 SUPERFAMILY Protein kinase-like (PK-like) 508 603 IPR011009 -
Lapu3g02949 732 CDD B_lectin 34 156 IPR001480 -
Lapu3g02949 732 Gene3D - 23 153 IPR036426 -
Lapu3g02949 732 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 222 IPR036426 -
Lapu3g02949 732 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Lapu3g02949 732 Pfam D-mannose binding lectin 77 182 IPR001480 -
Lapu3g02949 732 Gene3D Phosphorylase Kinase; domain 1 504 603 - -
Lapu3g02949 732 ProSiteProfiles PAN/Apple domain profile. 346 426 IPR003609 -
Lapu3g02949 732 SMART blect_4 34 156 IPR001480 -
Lapu3g02949 732 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 675 - -
Lapu3g02949 732 Pfam Receptor serine/threonine kinase 486 520 IPR022126 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02949 Lapu-Chr3 52558338 52566775 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02949 631 732 Receptor kinase-like Gene Family AT4G21410 40.196 2.36e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu3g02949 S_locus_glycop 6.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02949 - - gmx:106799702 1025.77