Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02945 ATGGCGACTCATCATCTTCCCGACCACTTCAAGTGTCCAATTTCCCTAGAAATAATGTCGGACCCTGTAATCCTCTCTTCGGGTCACACCTTCGACCGTTCCTCAATCCAACGTTGGTTGGACGCAGGCTACAGAACATGTCCAATTACCAAATTGCCCCTTCCCGACCAACCTTCCCTCATTCCCAACCACGCGCTCCGAAGCTTAATCTCCAACTACACCCTCATCCCTCCTCTTCACCAAACCATTTCCCAACCCCAAACCCTAATTTCCACCCTCACCTCTCCCTCTTCTTCCTCCGATTCCAAAATCGATTCCCTCCGCCACCTCACGCGCCTTTCCAAGCGTGACTCCGCCTTCCGCCGCCACCTCGCCGACTCCGCCGCCGTCCCAGCCGTTCTCTCCGCCGTCGTCGACCCGGCCCTTCAGGAGAAAGCGCTCCCGCTTCTCCTCAACCTCACCCTCGACGACGACACTAAGGTCGGCCTCGTCGCCGAGGGCGTTGTCGCGCGCCTCGTTGCTGTTCTCCTCAACGCGCCGCCTGACTGCCGCGCCGTCGCGGCCACCATCGTCACCAGCCTCTCCGTTGTCGAGGTCAACAAGGCCACCATCGGCGCGTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATTCTCCGCGACGGGAAAGGGAGGGAGAGGAAGGAGGCCGCCACTGCGCTCTACGCGCTCTGCTCCTTTCCGGATAACCGGAGAAGAGCCGTCAATTGTGGCGCGGTGCCGATTCTGCTTCGGAACATAGAAATTGGACTGGAACGGTGCGTTGAGGTAATTGGCGTTCTTGCGAAGTGTAAGGAAGGGAGAGAGCAAATGGAAGGTTATAACGGTTGTGTTCAGATTCTAGCTCGCGTTTTGAGGAACGGAAGCTCCAGGGGGATTCAGTATGCGCTTTTCGCACTTACTTCGCTTTGCTTGTATAGCCAGCGAATGGTGCTGTTGGCTCTGGAAGAAGGTGTTCTTGAAGCTTCTCTTGTGTTCGTCGAAGAAGATAATGAGAAAGTGAGGAGGAATGCGTGCAATTTGATTCGGGCTCTCCGTGGCAACAACAGCAACCACGATCGGGTGTAG 1104 0.5707 MATHHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGYRTCPITKLPLPDQPSLIPNHALRSLISNYTLIPPLHQTISQPQTLISTLTSPSSSSDSKIDSLRHLTRLSKRDSAFRRHLADSAAVPAVLSAVVDPALQEKALPLLLNLTLDDDTKVGLVAEGVVARLVAVLLNAPPDCRAVAATIVTSLSVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVNCGAVPILLRNIEIGLERCVEVIGVLAKCKEGREQMEGYNGCVQILARVLRNGSSRGIQYALFALTSLCLYSQRMVLLALEEGVLEASLVFVEEDNEKVRRNACNLIRALRGNNSNHDRV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02945 367 ProSiteProfiles U-box domain profile. 5 86 IPR003613 GO:0004842|GO:0016567
Lapu3g02945 367 FunFam RING-type E3 ubiquitin transferase 5 76 - -
Lapu3g02945 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Lapu3g02945 367 Gene3D - 87 367 IPR011989 -
Lapu3g02945 367 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Lapu3g02945 367 SUPERFAMILY RING/U-box 5 74 - -
Lapu3g02945 367 FunFam RING-type E3 ubiquitin transferase 70 261 - -
Lapu3g02945 367 PANTHER U BOX DOMAIN-CONTAINING 7 355 - -
Lapu3g02945 367 CDD RING-Ubox_PUB 7 57 IPR045210 -
Lapu3g02945 367 Pfam U-box domain 7 73 IPR003613 GO:0004842|GO:0016567
Lapu3g02945 367 SUPERFAMILY ARM repeat 87 357 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02945 Lapu-Chr3 52514448 52515557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02945 6 359 U-box Gene Family AT4G21350 58.904 1.06e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02945 - - gmx:100785141 542.732