Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02943 ATGGCTGAGGACTTCCAAGCTAGAATTTGTGGTGAAAACTGGTGGAGTAGTACTATTGATTCAGCAAGAACTGTATTCCCTCCAAGCTCATCATCGATTTCTTCTTCTCCTTGTTCCGTGGCAGCAGCTAATAATGATGCAGGAATCTACAGCACTCGCCAAACAGATTTCAAGGCAACCAAGTGTTGTGCTGAAGAGACTAACAATTTGGTTTCTAACACTTACCTGGGTTTTGTTGATGCACAGAAGCCACACAAGAGTGAATCAGCCAGTGGAAGTGGTGGCATGTTGATCGATTCCACCCTACAGATGATGGGTTTTGACCTCACATCTTCAACATCAGAGAATTGGAATCAGCCGCTATCAGTTCGATGTAATGGAAGGGGGGAGAGCAATTTTGATTCCGTGCTTCACGAAGAAACGGGAATAGATTCTTGTAATTCACAAATCCACAGGGATTGGATCCCAAAGAGCTTCTCCTCTGGTGTTGGAGGAGACCAAATCGATAATTTCAAGCTATTGAACCAAGAATTTTCAGTAGATTACCAGAGTTTAAGTTCTTTAACCAGCACTGGGTTATCATCAAATCGTGATTTCCCAATTGGATCAGCCTCATATGGTAACCCTTCAACGTTATATGACCCTGATCCTCATCCACAATTACCCCAGCACTCACTTTTCACCAGCCGTCCAATGTCCTATTCATCAAAGCCAAGTTATGGGACACCCTGCACTGAACTAACGCCATCATGGTCTAAAGTCTCTACTTTTTTTAAGCCCATAACAATCGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCCCTTTCTGGAATGCTTCCGCCGACGCACTTAACGACATAAGAGTGGGTACCTTTTCTTCATCACAATCACAATACCAAACGCCAACCTTTGCTCAAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGCACAGCAGCGAAGAAACTCTAGATTCAGCAACAATGGCGAAGAAAGATGTTTGTGAACCAGCACTAAAGAGGCCAAGGATTGAAACTCCATCCCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTTAATGTTTTGAGCACCTCATATATGAAAAATGGAGCTCCCATTCAACCGCAGCAGGGGTGTGATGATCTGAAAGACTCAGAAGGACCACAGGAAGATTTAAAATGTCGAGGGCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTGGCAACAGAAACCAGTGGTAGTGCAGAATTGTGGACGCCTACATTCAGGGGCGCACTCTTGAGGTAG 1416 0.4442 MAEDFQARICGENWWSSTIDSARTVFPPSSSSISSSPCSVAAANNDAGIYSTRQTDFKATKCCAEETNNLVSNTYLGFVDAQKPHKSESASGSGGMLIDSTLQMMGFDLTSSTSENWNQPLSVRCNGRGESNFDSVLHEETGIDSCNSQIHRDWIPKSFSSGVGGDQIDNFKLLNQEFSVDYQSLSSLTSTGLSSNRDFPIGSASYGNPSTLYDPDPHPQLPQHSLFTSRPMSYSSKPSYGTPCTELTPSWSKVSTFFKPITIAKQHPIGLHFSNNTPFWNASADALNDIRVGTFSSSQSQYQTPTFAQEKPNCPSTLLNKHSSEETLDSATMAKKDVCEPALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQPQQGCDDLKDSEGPQEDLKCRGLCLVPISSTFPVATETSGSAELWTPTFRGALLR* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02943 471 Gene3D - 358 416 IPR036638 GO:0046983
Lapu3g02943 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Lapu3g02943 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 414 IPR036638 GO:0046983
Lapu3g02943 471 CDD bHLH_AtbHLH_like 354 405 IPR045239 -
Lapu3g02943 471 FunFam Transcription factor bHLH123 family 358 420 - -
Lapu3g02943 471 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 189 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02943 Lapu-Chr3 52477741 52482311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02943 273 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 53.659 2.84e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02943 - - gmx:100784084 703.36