Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02928 ATGGCTTCCCAAATGAAGAGGGATATTTTGATCCAGGTCTTCTTGTGTTCTTTGCTGAGTTCTCTTATGCTAGTTAATGGAGTTGCAAGCGACATCTCCTGCTTAAAATCCATTAAGGATTCCTTGGAAGATCCGTATAATTACTTATCAAGCTGGACCTTCTACAACAAAACCGAAGGCTTCATATGCGCTTTTGTTGGCGTTTTATGCTGGCATCCTTATGAGAATAAAGTGTTAAGTCTCTCACTAGAAAACATGGGTTTGAAGGGTGAGTTTCCACAGGACATTAGGAATTGCTTGTCATTAACAGCCTTAAACCTTTCGCACAACCACCTCACAGGACCCATCCCCTCGGATATATCCACGTTACTCCCTTTTGCTACCTCCGTAGATCTCTCACATAACAAATTTAATGGGACTATTCCACCTACTTTGGCTAACTGCACTTACCTCAATTCTCTCAGGCTCGATAACAACAATTTAAGTGGTCACATCCCTCCAGAACTTGGACAGCTTCCCATGATCAAATCAATTTCTTTTGCCAACAATTATTTATCAGGGTCGGTGCCTTTCTTCCAACGCTCAATTTCTGTTGATTACTCCAAAACTGGAGAGCTTTGTGGTGGGCCTTTGCCTCCGTGCCCTTTGGACAACTCAAATGATTTCCCTCAATCGTTGAAGGAGGGTCTTGCTATTGGCTATGCTTTTTCAGTGACTTCTGTTATTGTCATTTACATGTCCTACTGTGCACCTTGGGAACAATCAAAGCATGACAGGAACAAGCACTGGAACAAGGCTAAAGAACTAGGCATATTTTTCTGGTCCATTGCTGGGAGAAAGACACCCACTCAAGCTCATCACAAACACGAATTGCAACCTCTGCAGTTGCAAGAGAAAGTCATCAAAGAGATTTCTATGGTAACAGAGAGAATGAAGTCCACAATGAGGTTCAACGAAGTCAGAGATGCAACTGACTGCTTTTCTATAGACCACGCCATTGGGATGGGGAAAATTGGAATAATGTACGAGGGAAGGCTACCCAATGGTTGGAACCTTGCCGTTAAGAGACTATTCGATTCCAAACAATACAAGAGACAGTTTCTTTTGGAAATAAGAATTCTGGGTAAGTACAGACACAAAAATATAATTCCCCTACTTGGGTTCTGTGTAGAAAGCAACGAAAGGATTTTGGTATACCAATTCATGTCAAATGGAAGGCTCTCAAAATGGTTGCGTCCTTTAGAAAATGAAGTTACATTGAAATGGCCTCAGAGGATCAAAATAGCACTTGGGGTAGCAAGAGGCTTATCCTGGCTCCACCATATATGCAACTTGCATGTTGTGCATCTTAATATCAGTTCCGAGTGCGTGTTGTTAGATAAGAATTTTGAACCAAAACTCTCCAATTTCGGAAAGGCCAAGTTTGTGAATCCCAACATTGAGGACGGTGCAAGCACAATGTTTTATGTGAGTGATGGGAAGAAAGATGTGTATGACTTTGGTAGTTTACTCTTTGAGCTAATCACAGGGAAAACATTGAAGGAGTTGTCCAGCTCATTCAATACTACTACAACAAACCTATCTGGAAACCCTTCAAGCCTTATTAACGCAATTGATGAATATCTGATAGGGGAAGGTTTTCAAAACGAGGTCTACTCTCTCATCAAAGTTGCATGCAAGTGTGTTCAGCCTTTCTCAGATGAAAGGCCAACGATGCTTGAAGTTTATGACACTATGATGGATATATGGGGGGAACAGCATAGGTATAGAGATGCTTCTCACGCACTCAATATGACTGTTTCTTCTGGTATATAG 1815 0.4149 MASQMKRDILIQVFLCSLLSSLMLVNGVASDISCLKSIKDSLEDPYNYLSSWTFYNKTEGFICAFVGVLCWHPYENKVLSLSLENMGLKGEFPQDIRNCLSLTALNLSHNHLTGPIPSDISTLLPFATSVDLSHNKFNGTIPPTLANCTYLNSLRLDNNNLSGHIPPELGQLPMIKSISFANNYLSGSVPFFQRSISVDYSKTGELCGGPLPPCPLDNSNDFPQSLKEGLAIGYAFSVTSVIVIYMSYCAPWEQSKHDRNKHWNKAKELGIFFWSIAGRKTPTQAHHKHELQPLQLQEKVIKEISMVTERMKSTMRFNEVRDATDCFSIDHAIGMGKIGIMYEGRLPNGWNLAVKRLFDSKQYKRQFLLEIRILGKYRHKNIIPLLGFCVESNERILVYQFMSNGRLSKWLRPLENEVTLKWPQRIKIALGVARGLSWLHHICNLHVVHLNISSECVLLDKNFEPKLSNFGKAKFVNPNIEDGASTMFYVSDGKKDVYDFGSLLFELITGKTLKELSSSFNTTTTNLSGNPSSLINAIDEYLIGEGFQNEVYSLIKVACKCVQPFSDERPTMLEVYDTMMDIWGEQHRYRDASHALNMTVSSGI* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02928 604 Gene3D Transferase(Phosphotransferase) domain 1 402 600 - -
Lapu3g02928 604 Gene3D Ribonuclease Inhibitor 28 214 IPR032675 -
Lapu3g02928 604 Gene3D Phosphorylase Kinase; domain 1 287 401 - -
Lapu3g02928 604 Pfam Protein kinase domain 329 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02928 604 ProSiteProfiles Protein kinase domain profile. 327 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02928 604 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Lapu3g02928 604 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 25 190 - -
Lapu3g02928 604 SUPERFAMILY L domain-like 29 196 - -
Lapu3g02928 604 FunFam Nuclear pore complex protein NUP107 28 191 - -
Lapu3g02928 604 SUPERFAMILY Protein kinase-like (PK-like) 308 578 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02928 Lapu-Chr3 52334182 52336582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02928 13 586 Receptor kinase-like Gene Family AT3G28450 34.950 7.55e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Lapu3g02928 Pkinase 1.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02928 - - gmx:102664092 892.878