Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02918 ATGGAGGACCCTAATTTTCTCCGTCAGTGGCACTTGAGTTATATTGATGACCCTAACTTACTGCCAATAGCCGCTGCTTTTGGAGAGACTTTACAACATCATGCATTTACTTATCCAGACTTCAATCCCAAAGCTTCCATGGACACTACACTTACTGACATTGAAAGACCAACAAAACATCATAAAAACATCAACTGGAATCCCAACAAAAGTGCTGCTCAGACATCAGATACACAATTTGTTTCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAGTCACATAGGTCCATTGGGATCAGTGAAGGCCAATGATGAGATGGGTTGTTCTATAACCAATAATAGCACAACTTCTCCAGACACTATCTCTCAAGGAATCTTGGGGAATCATAACTATCTTTTCAAGGCCTGCCAAGAGACCAAAAAGATTAGGACACGTTCTAAAGTTTCTCAACCTCAAGACCACATCATAGCTGAAAGGAAGCGACGAGAGAAGCTCAGCCAGCGGTTCATTGCCTTATCTGCCCTTGTTCCTGGATTACAGAAGACGGACAAAGCTTCTATTCTTGGAGACGCTATCAACTACTTGAAGAAATTGCAAGAGAAAGTAAAGGCTCTGGAGGAGGAACAAAACATGAAGAAAAATGTGGAGTCTGTGGTAATTGTGAAGAAATTTCAACTATCCAATGATGTTAACAACTCTTCTTCAGAATATGATGGTCCATTATTTGACGAAACAATTCCTGAAATTGAAGCAAGATTTTGTGAGAGAAACGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGAGTTGTGGAAAAAACAATCCATGAAATTGAGAATCTCCATCTGAAAGTCACCAACAGCAATGCCATGACATTTGGGAGATGTGCCCTTGATATGACAATTATTGCCCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAAGCTTCGTTCAGCTTTTACATCTTTCATGTGA 993 0.4018 MEDPNFLRQWHLSYIDDPNLLPIAAAFGETLQHHAFTYPDFNPKASMDTTLTDIERPTKHHKNINWNPNKSAAQTSDTQFVSFPNLLSFMDSSHIGPLGSVKANDEMGCSITNNSTTSPDTISQGILGNHNYLFKACQETKKIRTRSKVSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAINYLKKLQEKVKALEEEQNMKKNVESVVIVKKFQLSNDVNNSSSEYDGPLFDETIPEIEARFCERNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMTFGRCALDMTIIAQMDMEFCMGVKDVVRKLRSAFTSFM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02918 330 SMART finulus 156 205 IPR011598 GO:0046983
Lapu3g02918 330 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Lapu3g02918 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 214 IPR036638 GO:0046983
Lapu3g02918 330 CDD bHLH_AtNAI1_like 153 224 - -
Lapu3g02918 330 Gene3D - 147 224 IPR036638 GO:0046983
Lapu3g02918 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Lapu3g02918 330 Coils Coil 189 219 - -
Lapu3g02918 330 PANTHER BHLH TRANSCRIPTION FACTOR 28 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02918 Lapu-Chr3 52243017 52244723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02918 150 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.435 1.00e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02918 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02918 - - vun:114179595 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02918 3 52243017 52244723 Lapu3g02918 3 52243017 52244723 ECH
Lapu3g02918 3 52243017 52244723 Lapu6g01137 6 11320966 11322767 PCT