Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02896 ATGTTGCGGCTTTCGATTCATCGAGTGAGAAAGTTGAACTTTCTGAGGCCTCAGATCTCTGCATTGGGAAGGTCCCATTTCTCAACTGCTGCTGAACCCTCTTCCAGTAAGAGCAATCCACCGAGGGTTCCAAATCTTATTGGGGGCAGTTTTGTGGACTCAAAATCATCAACTGTCATTGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCGCAAGTTCCTTTGTCTACCGATGAAGAATTTAAAGCAGCTGTATCTGCAGCAAAGAAGGCATATCCATCATGGCGTAACACTCCAATTACAACACGCCAACGTGTTATGTTGAAGCTTCAGGAGCTTATACGCAGAGATATGGACAAACTGGCTCTGAATGTGACCACTGAACAAGGAAAGACGTTGAAGGATGCACAAGGAGATGTATTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAATATGTTTCCAATGTATCACATGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTTTGCGCTGGTATTTGTCCCTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTGTGGCTGTTACTTGTGGTAACACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTAGCGTTGGAGGCTGGTTTGCCAGATGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGACGATGATGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAACATGGGAGCCAAGAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTCTAAATGCTTTAGTTGCAGCTGGTTTTGGTGCTGCTGGTCAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTGGAGACTCAAAATCATGGAAACCTAAACTTGTAGAGCGTGCCAAAGCTCTCAAGGTAAATGCTGGAACTGAACCTGATACAGACCTTGGTCCGGTGATCAGCAAGCAGGCAAAGGATAGAATACACAGACTTGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTGCTGGACGGAAGAAATATTGTGGTCCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATATCACTGCCAACATGGAGTGCTACAAGGAGGAAATATTTGGCCCAGTTCTTCTTTGCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAACAGTAACAAGTACGGAAATGGTGCTTCTATATTCACCACATCTGGTGTTGCTGCAAGGAAATTTCAGACTGAGATAGAGGCTGGCCAGGTTGGCATTAATGTTCCCATCCCAGTTCCTTTGCCCTTCTTCTCATTCACTGGCAACAAGGCATCGTTTGCTGGTGATCTGAACTTCTATGGCAAGGCAGGGGTGAACTTCTTTACACAGATCAAGACAATAACACAGCAATGGAAGGATTCAACTGGTGGTAGCAAGATTAACTTGGCAATGCCAACCTCCCAAAAGTAG 1614 0.4387 MLRLSIHRVRKLNFLRPQISALGRSHFSTAAEPSSSKSNPPRVPNLIGGSFVDSKSSTVIDVINPATQEVVSQVPLSTDEEFKAAVSAAKKAYPSWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPDGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGDSKSWKPKLVERAKALKVNAGTEPDTDLGPVISKQAKDRIHRLVQSGVESGAKLLLDGRNIVVPGYESGNFIGPTILSDITANMECYKEEIFGPVLLCMEADSLEEAINIINSNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFFTQIKTITQQWKDSTGGSKINLAMPTSQK* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02896 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 488 - -
Lapu3g02896 537 SUPERFAMILY ALDH-like 38 520 IPR016161 GO:0016491
Lapu3g02896 537 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Lapu3g02896 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 519 IPR010061 GO:0004491
Lapu3g02896 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Lapu3g02896 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491
Lapu3g02896 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Lapu3g02896 537 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
Lapu3g02896 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Lapu3g02896 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 535 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02896 Lapu-Chr3 51975174 51982216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02896 1 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.511 0.0 847