Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02895 ATGTCTTTTCTCTGGTTTCTTAATCTCACTCTCAAATGCCTTTATCATTTTGCATGGCCTCTTCTTGCTTTGGGGTATCCTCTATGTGCTTCAGTACAAGCAATTGAGACCGATTCCTATAAAGAAACTAGGGATTTGATATCATATTGGATACTTCTCTCGCTTATATACCTATTTGAGTATGTATTTTTTAGGCTTCTTCAATGGTTTCAGTTCTGGCCTTACGCTAAGCTAATGATCATCCTCTGGCTCATTATGCCAGACTTTGGACGAGCTTCTTATGCCTACAATATTATTATTCGCACATCCATCTCTTCAAATTCACAAGCAGTCATTCGCAGTTTAAATAACTGGAAGATGTTTTTTGTCAAGAAAGATAATTTTTTACTGCATGCAGAGAGATATGTCGAAGAGAATGAAACGGAAGCCTTAATGAAACTCATTGCTAACAAGAACTCGACTTACGAACCTGTCTCTGAAGCAACAAATGCAAGTAAAGTTAGTGACCTTAAAGAAATACAACAGACAATTAAGAAAAAGCTCCAGACAGAGAACAAAGTCATAAAAGATTTGGAGGTCATAGAAAAAAAAGAAATTCCTGCTGGCAAGCAAGATATTCCTGTAGTGCCTAAACTTGAGCAAAGTCAGAATGCTTCACCAACCATGTTGGAAACTAAAGGAGTAGTGGTGAAAGACAAGGCTGATGGAGAGTTTCCTCAGAGTTCTACACATAAGGAAGTTCAGAAGGAGTGGACTTGCGCTTTATGCCATGTAACAACATCGAGTGAGAAAACTTTGAATGAGCACCTGAAAGGGAGCAAACACTCGGCTATGAAGAATGCTCTGAAGGCAAAGAATCAATCACAGAAGCTGAGAAGTGATCATTACAAAAGGGAATTGAAACAGAAGAACATTATCCATGAGCTAAATTCCAAGACCAAGAATGGAGAGAAAGTGCAAAATAAAGCAGGTAAACCTGCTCGGACGAAGAACTCCAAATTAAGATGTGAAGTCTGTAATGTGACATGTCCATGCGAGATTACCTTGGCCTCTCACAAAAGAGGGAAGAAGCATTTGGCTAATCTGACATGTGTTAGTAACAGATGTAGTTTTTTTGTTTGA 1122 0.385 MSFLWFLNLTLKCLYHFAWPLLALGYPLCASVQAIETDSYKETRDLISYWILLSLIYLFEYVFFRLLQWFQFWPYAKLMIILWLIMPDFGRASYAYNIIIRTSISSNSQAVIRSLNNWKMFFVKKDNFLLHAERYVEENETEALMKLIANKNSTYEPVSEATNASKVSDLKEIQQTIKKKLQTENKVIKDLEVIEKKEIPAGKQDIPVVPKLEQSQNASPTMLETKGVVVKDKADGEFPQSSTHKEVQKEWTCALCHVTTSSEKTLNEHLKGSKHSAMKNALKAKNQSQKLRSDHYKRELKQKNIIHELNSKTKNGEKVQNKAGKPARTKNSKLRCEVCNVTCPCEITLASHKRGKKHLANLTCVSNRCSFFV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02895 373 Gene3D Classic Zinc Finger 231 281 - -
Lapu3g02895 373 Gene3D Classic Zinc Finger 311 363 - -
Lapu3g02895 373 PANTHER HVA22-LIKE PROTEINS 5 159 IPR004345 -
Lapu3g02895 373 SMART c2h2final6 251 275 IPR013087 -
Lapu3g02895 373 SMART c2h2final6 334 358 IPR013087 -
Lapu3g02895 373 SUPERFAMILY beta-beta-alpha zinc fingers 241 287 IPR036236 -
Lapu3g02895 373 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Lapu3g02895 373 SMART ZnF_U1_5 331 365 IPR003604 GO:0003676|GO:0008270
Lapu3g02895 373 SMART ZnF_U1_5 248 282 IPR003604 GO:0003676|GO:0008270
Lapu3g02895 373 Pfam Zinc-finger of C2H2 type 335 358 - -
Lapu3g02895 373 Pfam Zinc-finger of C2H2 type 251 275 - -
Lapu3g02895 373 SUPERFAMILY beta-beta-alpha zinc fingers 325 363 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02895 Lapu-Chr3 51969556 51973145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02895 250 362 C2H2 Transcription Factor Family AT5G61190 27.338 1.11e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02895 - - pvu:PHAVU_002G214600g 542.732