Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02889 ATGGATATGATGAATAATCGCTGTCAAAACGGGGAAGTGCCGCCGGGGACAGCGCTTCCTATGCAGGTGGATGCTTTCCATTACGCCAATGGTTCCGATGAAGGGGAAGAAGCTGCAGCTGCTCCCCTAGTCCATGCTTCTTCTGCTTTGGACGCTAGAACCAGAACCAGTGAACTCACCATTTCCTTCGAAGGCGAGGTCTATGTTTTCCCTGCTGTTACGCCACAGAAGGTGCAGGCTGTATTATTACTGTTGGGAGGGCAGGAGATGCCAAATACAGTCCCTGCCTCAGACTTTTTGTTGCAGCAGAACAGTCAGGAAATTAGGGAAATAAATGATCCTTCTCGATGTTCGAAACTTTCACGAAGAATTGCATCGCTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGATACTCATGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGTCAATTTGCATCACTGAAGGAAGACTGTAAATCTCATGTTGACAATTGGGATTCAAGCAATGGTACTCCTGCCCCAGAATCTATTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTATGCAATGCCTGTGGACTTATGTGGGCTAATAAGGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATAGCTTTTGAGCAAAATGAACTGGATTCTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAGGACAAGGAGGGAAGCCCTGAGGAAACAAAGCCTGTGCAGATTGATTCCATACGGTCACCTGAGAAGACAAATGAGCAGTTTATTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGGGAATCATGCTCTTAATCTGCATGAGCAGGATACTCTTGAGGATCTAGCTGATGCTTCTGGGACTGAATTTGAGATTCCAGCAGGTTTTGATGAACAGGTTGACATTGATGATTCCAACATGAGGACATATTGGCTGTGA 1065 0.4563 MDMMNNRCQNGEVPPGTALPMQVDAFHYANGSDEGEEAAAAPLVHASSALDARTRTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQEMPNTVPASDFLLQQNSQEIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDCKSHVDNWDSSNGTPAPESIERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNELDSSADIKPSKAEAEHSCAKQDKEGSPEETKPVQIDSIRSPEKTNEQFIIGTAESVTDNLSIQVGNHALNLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02889 354 Pfam CCT motif 123 164 IPR010402 GO:0005515
Lapu3g02889 354 SMART GATA_3 186 239 IPR000679 GO:0006355|GO:0043565
Lapu3g02889 354 MobiDBLite consensus disorder prediction 248 278 - -
Lapu3g02889 354 ProSiteProfiles Tify domain profile. 52 87 IPR010399 -
Lapu3g02889 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 240 - -
Lapu3g02889 354 CDD ZnF_GATA 191 234 IPR000679 GO:0006355|GO:0043565
Lapu3g02889 354 Gene3D - 185 243 IPR013088 GO:0006355|GO:0008270
Lapu3g02889 354 Pfam tify domain 56 86 IPR010399 -
Lapu3g02889 354 MobiDBLite consensus disorder prediction 248 274 - -
Lapu3g02889 354 Pfam GATA zinc finger 192 228 IPR000679 GO:0006355|GO:0043565
Lapu3g02889 354 ProSitePatterns GATA-type zinc finger domain. 192 219 IPR000679 GO:0006355|GO:0043565
Lapu3g02889 354 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Lapu3g02889 354 PANTHER GATA TRANSCRIPTION FACTOR 28 37 333 IPR045280 GO:0006355
Lapu3g02889 354 SMART tify_2 52 87 IPR010399 -
Lapu3g02889 354 ProSiteProfiles GATA-type zinc finger domain profile. 186 243 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02889 Lapu-Chr3 51860498 51866415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02889 58 235 Tify Gene Family AT1G51600 58.065 8.32e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu3g02889 CCT 4.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02889 - - gmx:100785549 574.704