Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02878 ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAATATCAGTTCCAGACAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAACTCTTTGAGTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCGCGATCGTCATTCAGCAATGCATAGACTGGATCGTCCCTCTATTGAGCTGCAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAATCATGAATTGAGGCAGTTGAATGGGGAAGATCTGCAAGGATTAACACTACAAGAACTGCAGAAAATAGAGGAACATCTTAAAAGAGGTTTGACCAATGTTTCAAAACTAAAGGATGAAAAAGTTATGCAAGAGATCAGCACCCTTAAGAGAAAGGTAAAATCTTAA 474 0.4008 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMQQVIERRDRHSAMHRLDRPSIELQIESDSNDILRKKVEDKNHELRQLNGEDLQGLTLQELQKIEEHLKRGLTNVSKLKDEKVMQEISTLKRKVKS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02878 157 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Lapu3g02878 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g02878 157 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g02878 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g02878 157 FunFam Transcription factor, MADS-box 13 82 - -
Lapu3g02878 157 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Lapu3g02878 157 Coils Coil 92 112 - -
Lapu3g02878 157 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 139 - -
Lapu3g02878 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu3g02878 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g02878 157 ProSiteProfiles K-box domain profile. 85 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g02878 157 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g02878 157 Coils Coil 122 142 - -
Lapu3g02878 157 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu3g02878 157 Pfam K-box region 93 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g02878 157 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02878 Lapu-Chr3 51766019 51775938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02878 1 154 MADS-box Gene Family AT2G22540 56.410 5.13e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu3g02878 K-box 9.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02878 - - gmx:100815814 275.018