Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02877 ATGGACGGCGCTGGCGGAGGAAACCGAGCGGAGGCGGAGCGGTGGCTGTACACCGCGAACAAGCTGCTCAGCGCGCGCGACCTGCACGGGGCGCGCTCCTTCGCGATCCGAGCGCGCGAGTCCGACCCGACTTACGAGGCCTCCGAGCACCTCCTGACGGTGATCGACACGCTCCTGGCGGGAGAGTCGCGAATCAACGACCACCACCGCGACTGGTACGGGATCCTCCAAATCCTCCGCTACACCACCAACGTGGACCACATGGCCGCCCAGTACCGCCGCCTAACCCACCTCCTCGACCCCAGCCGCAATTTCTTCGCCTTCGCCAGCCACGCCTTTTCCCTCGTCAACGACGCCTGGTCCGTACTCTCCAACCCCGCCAAGAAAGCCATGTACGACAGCGATCTCCAGTTGCTCACCTCTCCACCGGCGCAGCCTCAGCCCCAGCCCCAACCCACGCCCAGGCGAAACCCTAGATCGAGGGACAACTCGGCCGAGGCGACTCGCCCGAACTCCAATCATGCCGAGTCCGCTGAGTCTACTAGGCACACTCGAACCGTCGAAACCGACGGGAGAACGAGTTTCTGGACCTCGTGCCCTTACTGTTATATTTTGTATGAATACCCGAAGGGGTACGAGGAGTGTACCTTGAGGTGTCAGAGTTGCCGGAGGGGATTTCATGCGGTGGTGATACGGTCACCACCGCCGTTGAACGGGAAAGACGGTTCCTATTGTACTTGGGGTTTTTTCCCGTTGGGCTTTTCTGTGAATTCCAAGGACGTAAACGGGTTATCCTCTAATTGGAACCCGTTTTCCCCTTTGTTTCCTTGCCCTTTGAAGGGATCGTCCTATAGGAAGCCTACAAGGAATTGGGCTTATTATGATGACGAGGCTGCTGCCGCGTTTATCGAGTTATCCGACCCCAGTGACGACGATTCCGGTGATGGGGACTGGAGGGTTGTGAAGAGTAGGGGAAGGAAGAGGACTAGAGTTAATAAAAATTCTGGTTATGGAAGGAGGGGACCTAGGAGGGGTGTTCATACAGGGCATGGTGTTCATACAGGGCATGAGAATGTGGGTTCCGGGGATCCTGCTACAGCTGCTACTGCTACTGCTAGTGCTGCCTCTGCTTTGCCTTCGGGTGCGATGGCGGAATCTAGTAAGAAGGCTGCGTTGGGTGGTTCGAGGAGGAGGGGTGCTGCAAACTTGGGGAAGTTGGATTTGAATGTGGAATTCAGCAATGAGGTGGAGGAGCCTTCCCGTGGAGTGCGCGATCGCGAGGGGAATGCTGCTGGACATGCTGAGGATAATATTGAAGGGATTGGATTTTTTGAAGGCCTTGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTTGTGGCAGATGATAAGGTTAAGGGTCATTAG 1407 0.5665 MDGAGGGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPTYEASEHLLTVIDTLLAGESRINDHHRDWYGILQILRYTTNVDHMAAQYRRLTHLLDPSRNFFAFASHAFSLVNDAWSVLSNPAKKAMYDSDLQLLTSPPAQPQPQPQPTPRRNPRSRDNSAEATRPNSNHAESAESTRHTRTVETDGRTSFWTSCPYCYILYEYPKGYEECTLRCQSCRRGFHAVVIRSPPPLNGKDGSYCTWGFFPLGFSVNSKDVNGLSSNWNPFSPLFPCPLKGSSYRKPTRNWAYYDDEAAAAFIELSDPSDDDSGDGDWRVVKSRGRKRTRVNKNSGYGRRGPRRGVHTGHGVHTGHENVGSGDPATAATATASAASALPSGAMAESSKKAALGGSRRRGAANLGKLDLNVEFSNEVEEPSRGVRDREGNAAGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02877 468 Pfam DnaJ domain 71 133 IPR001623 -
Lapu3g02877 468 MobiDBLite consensus disorder prediction 305 383 - -
Lapu3g02877 468 SMART dnaj_3 70 128 IPR001623 -
Lapu3g02877 468 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 341 - -
Lapu3g02877 468 Gene3D DnaJ domain 60 145 IPR036869 -
Lapu3g02877 468 MobiDBLite consensus disorder prediction 138 187 - -
Lapu3g02877 468 CDD DnaJ 71 125 IPR001623 -
Lapu3g02877 468 SUPERFAMILY Chaperone J-domain 67 136 IPR036869 -
Lapu3g02877 468 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
Lapu3g02877 468 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02877 Lapu-Chr3 51750455 51752295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02877 11 467 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 42.887 9.63e-110 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02877 - - var:108324594 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02877 3 51750455 51752295 Lapu6g01100 6 10978817 10981037 PCT