Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02873 ATGGAGCAGCATCACAGAAAGTTGATGTCAGTTGTCCCTTCATTGCCAAAGTCAGATGATGATCCCGAACAAAGACACGACAAAGGCAACAAAACCATATATTTGATCATCTGTTTTTCCGTTGTAGCCGCCGCTTTCGTTGTCCTCTGCTCCTACGCCATCTATGTCAAGTTTTTCTCTCCTAGGAACAGGTCTGCCAGGAGAACCTTGTCACGGCCTCAAACTGAGGAAGATTTCTTAGACGAAGAAGAACATGGCCCTGTGGTTGACCACCCCATCTGGTACATCCGCACCACTGGCCTCCAACAATCAGTGATCGGTTCCATCACCGTTTGCAAGTACAAGAAAGATGAAGGCTTGATTGAAGGGTCGGAATGTTCAGTTTGTTTGAGCGAGTTTCAAGAGGATGAGAGTCTCAGGCTTTTGCCCAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACCTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGAGCTCCTATTGTTACTGACCCCACAAGGGTTCCATCCATGGACCCCAATGCTTTTGGTTCCAGGTCTTTTGTGGAGATGGAAGTTTCGGAAAGTGGTGGTGGAGTTGAACATAATCATGCTCCTGCTCCTGCTCCTGCTCCTGCTCATGCTCAAGCCCAACATGGTGATGATTTGTTGAGGGGTGAGGTAGAGGAAGAAGTTGAAGTGTGTGAAACTGAGAACTTGGCTTCAGAAGTGGCGGCTGTTCAGCCAAGAAGATCAGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCAACTGTTGTGTCAGGGGATTCTCATGGGAATACTTCAAAGAGGGTTAAAGCTGGCTGCAGTTCTTCTTCCACTAGTTCCATAAAGAGGTCACGATCCTTCAATGCCAAACATTTAATATCATGGTATAGCCGAAGCCAGAGAAAGCCAAATGCTCCATTGAGAAGCTTCTGA 984 0.4736 MEQHHRKLMSVVPSLPKSDDDPEQRHDKGNKTIYLIICFSVVAAAFVVLCSYAIYVKFFSPRNRSARRTLSRPQTEEDFLDEEEHGPVVDHPIWYIRTTGLQQSVIGSITVCKYKKDEGLIEGSECSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPNAFGSRSFVEMEVSESGGGVEHNHAPAPAPAPAHAQAQHGDDLLRGEVEEEVEVCETENLASEVAAVQPRRSVSLDSSSAAKISLALATVVSGDSHGNTSKRVKAGCSSSSTSSIKRSRSFNAKHLISWYSRSQRKPNAPLRSF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02873 327 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 176 IPR044675 -
Lapu3g02873 327 FunFam RING-H2 finger protein ATL54 101 174 - -
Lapu3g02873 327 MobiDBLite consensus disorder prediction 276 301 - -
Lapu3g02873 327 SMART ring_2 126 167 IPR001841 -
Lapu3g02873 327 MobiDBLite consensus disorder prediction 196 222 - -
Lapu3g02873 327 CDD RING-H2_EL5-like 125 168 - -
Lapu3g02873 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 175 IPR013083 -
Lapu3g02873 327 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Lapu3g02873 327 MobiDBLite consensus disorder prediction 1 25 - -
Lapu3g02873 327 SUPERFAMILY RING/U-box 117 175 - -
Lapu3g02873 327 Pfam Ring finger domain 125 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02873 Lapu-Chr3 51673355 51674896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02873 22 193 C3H Transcription Factor Family AT1G72220 49.721 3.91e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02873 - - vun:114177727 509.22