Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02862 ATGAACATTGAAGCCACCACACTAGAAATTGAAGGTGCAACTACGATGAATGGTGGAACTGAGGGTGTCTGCTTGACATGGGAGAATGTATGGGTGACTGCTTCCAGTAGAAAGAGTGGAAGCAGACCAATTCTTGAAGGTCTCACTGGTTATGCTAAACCTGGGCAACTCTTGGCAATAATGGGTCCTTCTGGCTGTGGCAAATCTACTCTCCTTGATACTTTAGCAGGGAGATTGGGTTCAACGATGAGGCAAACCGGGCAGATTCTGATCAATGGTCACAAACAAACCTTGACTTATGGAACCTCAGCATATGTCACACAAGATGATACCTTGTTGACAACCTTAACAGTTAGAGAAGCAGTGCACTATTCAGCTCAACTCCAGTTGCCTGACACCATGTCCAAAGAAGAGAAGAAAGAGAGAGCAGATTTTACAATCAGAGAAATGGGTCTTCAAGACGCCATTAACACAAGAATTGGAGGATGGGGTTGTAAAGGGATTAGTGGGGGTCAGAAAAGGAGAGTTAGCATCTGCATTGAGACCCTAACACGCCCTAAACTTCTCTTTCTTGATGAACCAACTAGTGGACTTGACAGTGCAGCTTCCTATTATGTTATCAGAAGAATCGCTTCCCTTGCTCAAAATGACAACATTCAGAGGACTGTTATTGCATCAATCCATCAACCCAGTACTGAAGTTTTTCAACTCTTCAATAACCTTTGTCTTTTGTCTTCGGGTAAAACAGTTTACTTTGGACCTGCTTCTGCTGCAAGTGAGTTTTTCGCTTCAAATGGCTTTCCTTGTCCTCCTCTCATGAATCCGTCTGATCACTTACTGAAAACTATAAACAAGGATTTCGATCAGGACATTGAGGTGGGTTTAGCTGGAAATAGAAACTTACCAACAGAAGAAGTAATTCGCATCCTTGTGAACTCATACAAATACTCTGAAAGGAATCAAGAAGTTCAAAATGAAGTAGCTCTACTATCTAAGAAGGATACCAGTTCATTGGATGTGAAGAGAGAGCATGCTGGCTTCCTTAATCAGTGCTTAGCTCTTACCAAAAGATCATCCGTTAACATGTACCGTGATCTCGGCTATTATTGGTTACGCCTCGCCATATATGTTTTATTGGCTATAAGTTTAGGCACTGTTTTCTATAATATGGACACAAGTTATGACTCAATTAAGGATCGAGGTTCGCTTATTGCATTCGTAAATGGATTCCTGACTTTCATGACTATTGGTGGATTCCCTTCCTTCGTGGAAGTCATGAAGGTATTTGAGCGAGAAAGAGAAAACGGACATTATGGTGTGACTGCATTTGTGATTGGAAACACCTTCTCATCTCTGCCATACTTGGTATTGGTTTCACTGATTCCTGGGGTTCTGACTTACTACCTTCCAGGTCTTCAGAGTGGATTCGAGCACTTTGTGTATTTCATTTGTGTTTTATTTTCTAGTCTGATGTTAGTGGAGAGCCTTATGATGATAGTTGCGAGCATTGTTCCCAACTATCTTATGGGCATCATAACTGGTGCTGGAATTCAAGGAGTCATGCTTTTACTCAGTGGCTTCTTTAAGTTGCCAAACCATATTCCCAAGCCTGTTTGGAAATACCCCATATACTACGTTGCTTTTCATACCTTTGCTAACCAAGGAATGTTCAAGAACGAATATGAAGGACTAAGATTTGAGTCCAATGATGGAGCAAACTCACACAGTTACATCACTGGTGAAGAGGTTTTGAGAAATGTATGGGAAGTTGACATGAGTTACTCCAAGTGGGTTGATCTTGAAATCTTGCTGGGGATGATTGCTCTATATCGATTTTTATTTTTGGTTATTATCAAGATGAAAGAGAAGATGAAGCCCATTGTTGTATCACTATCTTCCCAGAGATCAACAGTACAAGTCATGGAACACCCCAATGCCACTCCTTCACATTGA 1953 0.4127 MNIEATTLEIEGATTMNGGTEGVCLTWENVWVTASSRKSGSRPILEGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGSTMRQTGQILINGHKQTLTYGTSAYVTQDDTLLTTLTVREAVHYSAQLQLPDTMSKEEKKERADFTIREMGLQDAINTRIGGWGCKGISGGQKRRVSICIETLTRPKLLFLDEPTSGLDSAASYYVIRRIASLAQNDNIQRTVIASIHQPSTEVFQLFNNLCLLSSGKTVYFGPASAASEFFASNGFPCPPLMNPSDHLLKTINKDFDQDIEVGLAGNRNLPTEEVIRILVNSYKYSERNQEVQNEVALLSKKDTSSLDVKREHAGFLNQCLALTKRSSVNMYRDLGYYWLRLAIYVLLAISLGTVFYNMDTSYDSIKDRGSLIAFVNGFLTFMTIGGFPSFVEVMKVFERERENGHYGVTAFVIGNTFSSLPYLVLVSLIPGVLTYYLPGLQSGFEHFVYFICVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGVMLLLSGFFKLPNHIPKPVWKYPIYYVAFHTFANQGMFKNEYEGLRFESNDGANSHSYITGEEVLRNVWEVDMSYSKWVDLEILLGMIALYRFLFLVIIKMKEKMKPIVVSLSSQRSTVQVMEHPNATPSH* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02862 650 ProSitePatterns ABC transporters family signature. 168 182 IPR017871 GO:0005524|GO:0016887
Lapu3g02862 650 Pfam ABC transporter 47 196 IPR003439 GO:0005524
Lapu3g02862 650 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 20 634 - -
Lapu3g02862 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 260 IPR027417 -
Lapu3g02862 650 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 271 IPR003439 GO:0005524
Lapu3g02862 650 SMART AAA_5 54 243 IPR003593 GO:0016887
Lapu3g02862 650 Pfam ABC-2 type transporter 228 329 IPR043926 GO:0140359
Lapu3g02862 650 Pfam ABC-2 type transporter 350 561 IPR013525 GO:0016020|GO:0140359
Lapu3g02862 650 Gene3D - 25 274 IPR027417 -
Lapu3g02862 650 FunFam ABC transporter G family member 11 23 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02862 Lapu-Chr3 51551574 51556491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02862 41 232 Calmodulin-binding Proteins AT2G36910 29.353 3.47e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02862 K05681 - gmx:100794527 1069.68