Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02860 ATGGAAAACGACGACGTTGATATGCTCGGTGCTGACAGCAATGAAGCTGGCTTAGAGTTGGATGACATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTTCTGCTTTGCGGGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTACAAGTTCCTGCTACTGCTGCTGCAAGTCAGAACAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTGGGCAATGTGGACTATTCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACCGTAAACCGAGTCACCATCCGAACTGATAAGTTTGGCCAACCAAAGGGCTATGCTTACGTAGAGTTTCTTGAAGTACAGGCTGTTCAAGAAGCTCTTTTGCTGAATGAATCTGAACTACACGGGCGTCAATTGAAGGTTACTGCTAAGAGGACCAACATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCGTATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGAAAAGTTCCAAGGTTTAGAATGGGGATGCGCTATAGTCCCTACTATTGA 597 0.4707 MENDDVDMLGADSNEAGLELDDMKKRLKEMEDEASALREMQAKVEKEMGSVQVPATAAASQNNKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVQAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYQGFRGRAPYAPPFAYAPFGYGKVPRFRMGMRYSPYY* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02860 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Lapu3g02860 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 13 158 - -
Lapu3g02860 198 Gene3D - 4 152 IPR012677 -
Lapu3g02860 198 CDD RRM_II_PABPs 71 142 - -
Lapu3g02860 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Lapu3g02860 198 MobiDBLite consensus disorder prediction 45 64 - -
Lapu3g02860 198 SUPERFAMILY RNA-binding domain, RBD 58 168 IPR035979 GO:0003676
Lapu3g02860 198 SMART rrm1_1 71 142 IPR000504 GO:0003723
Lapu3g02860 198 Coils Coil 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02860 Lapu-Chr3 51489066 51494128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02860 71 197 Eukaryotic Initiation Factors Gene Family AT2G36660 25.581 1.81e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02860 K14396 - mnt:21400190 336.265