Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02855 ATGGACAGTCTTTGTTGCTTCAGCTCTGTCAGCCAGGTGGTTGGAGGACGTTCTTCATGTAACTCTGGCAAGGGCAAGAGCAGTCAGTCCTCAGTCAAATATGGCTATAGCCTAGTTAAAGGGAAGGCTAACCATCCCATGGAGGACTACCATGTAGCAAAATTAGTCCAGTTCAACGGGCGAGAGCTTGGCCTTTTTGCTATATATGATGGACACCTTGGAGACAGTGTGCCGGCCTATTTACAAAAGCATCTGTTTTCTAATATCTTGAAGGAAGAGGACTTCTGGAATGATCCATTCATGTCCATTACTAATGCGTATGAAACAACAGATCAGGCAATCCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCAGTGACTGCAATTCTCATAAATAATCAGAAATTATGGGTAGCTAATGTAGGAGATTCACGAGCTGTTGTGTCAAGGGGAGGGGAGGCTGCACAGATGACAACTGATCATGAGCCCAATACTGAGCGGGGCAGCATTGAGACAAGAGGTGGCTTTGTCTCAAACATGCCAGGTGATGTTGCAAGAGTGAATGGGCAGCTAGCAGTTTCTCGAGCCTTCGGAGACAAAAACCTCAAAACACACTTGCGATCTGATCCTGACATTCAGTACACTGATATTACCCCAGATGTTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAAGCTGTTGATATTGCAAGAAAAATAAAGGATCCACAAAAGGCAGCCAAACAACTAGCCACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGGTTGA 849 0.4488 MDSLCCFSSVSQVVGGRSSCNSGKGKSSQSSVKYGYSLVKGKANHPMEDYHVAKLVQFNGRELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWNDPFMSITNAYETTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVVSRGGEAAQMTTDHEPNTERGSIETRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYTDITPDVELLILASDGLWKVMANQEAVDIARKIKDPQKAAKQLATEALNRDSKDDISCIVVRFKG* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02855 282 CDD PP2Cc 32 280 IPR001932 -
Lapu3g02855 282 SUPERFAMILY PP2C-like 28 281 IPR036457 -
Lapu3g02855 282 SMART PP2C_4 29 278 IPR001932 -
Lapu3g02855 282 MobiDBLite consensus disorder prediction 153 176 - -
Lapu3g02855 282 PANTHER PROTEIN PHOSPHATASE 28 280 IPR015655 GO:0004722|GO:0006470
Lapu3g02855 282 Pfam Protein phosphatase 2C 42 273 IPR001932 -
Lapu3g02855 282 Gene3D - 17 282 IPR036457 -
Lapu3g02855 282 ProSiteProfiles PPM-type phosphatase domain profile. 33 280 IPR001932 -
Lapu3g02855 282 FunFam Probable protein phosphatase 2C 39 24 281 - -
Lapu3g02855 282 SMART PP2C_SIG_2 44 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02855 Lapu-Chr3 51424926 51433697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02855 1 281 PP2C-type Phosphatase Gene Family AT1G22280 70.383 7.30e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02855 K17506 - gmx:100801722 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02855 3 51424926 51433697 Lapu3g02855 3 51424926 51433697 ECH
Lapu3g02855 3 51424926 51433697 Lapu6g01070 6 10708368 10714218 PCT