Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02848 ATGGATTCTGCGTTCTCCGTTACCTCCACGGCGCACGTGTCGCTTTTCAGAGCACTCCACCGTCATTTTGCTGGAGCTCCTCAACGCGCCTTCGTCCGCCGCAACCTCAAATGCGTCGTGGCTTCCTACAACAACCGCTGCCGCATTCCATGTTCTTCCGCTTCCGCGCCGTCGCGGTCCTCGTTCCGTTGCTTCCGCGGACTGCTCCCGGGAACGCCTTGCCGACTACGCTGCATTTCGACCTCCGCCGCTTCCTTTGCTTCTTTCACCGGCGGTGGGAATGGCGGCGGCGGAACTAGTGACAGCGGCGGAGATGGCAGTTCTGGCGGTGAGTCTGGTGATGCTAGTCTCCAATTGGTTGGAGACGCGTCACAGGAGCTTTCGGCACTTTCGCCTGACGTTATCATTCTCGATGTTTCAGGAATGGTGTGCGGGGGATGTGCGGCGACTGTGAAAAGGATACTGGAAAATCGACCACAGGTGTCATCAGCTAGTGTAAATTTAACAACAGAGACAGCAATCATCTGGCCTGTATCTGAAGCAAAGAATACACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACTAGCTGTGGTTACAATTCTAGCCTCCGAGATTCTACAAGAGACAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAAAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGACATTTCTCTCATTTCTTTGCAGCAAAGGCACCATGGATCCATGTATTTCATTCGATTGGGTTTCATCTATCCTTATCTTTGTTTACATTGCTTGGACCTGGCCGCCAACTTATCCTCGATGGCTTAAAAAGCCTCCTTAAAATGACACCAAACATGAACACCTTAGTTGGTCTTGGAGCTCTGTCGTCATTTACTGTCAGTTCGCTTGCTGTCTTAGTGCCAAAATTGGGATGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATAGCATTTGTCTTGTTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGTCTTCTTAGTTTATTGCCACCCAAAGCTCGCCTTCTAGTTAACAATGGGGAACCAAAGGCTGGCTCAGTTGTTGAAGTCCCTTCTGACAGTCTTTCTGTTGGAGACCAAATTATTGTGTTGCCTGGAGACCGTATTCCGGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTGTAGATGAATCAAGTTTCACTGGTGAACCACTGCCAGTAACAAAAGTACCTGGGAGTGAGGTAGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACAGTGGAAGTGCAAAGACCCGGTGGCGAAACTTCTATGGCAGGCATTGTTCGTCTAGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAACGGTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTGATGGCAGCCTCTGCTGCCACATTCACATTCTGGAGTCTGTATGGTACACACATTTTGCCTCCTGCTTTATACCAAGGAAGTTCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACTTCTTTGGGGGCTAAAAGAGGTTTACTTCTACGTGGTGGAAACATTCTAGAGAAGTTTGCAATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACGGTTGGTAGACCTGTTGTGACCAACATTGTCACTCCGACATGCATTAAAAATGCAATTTCAAGGCAAACTGAAGAAAATGCTTTGTCTGATGTTGAAGTTCTAAGGCTAGCGGCTGCAGTAGAATCAAATTCCATACATCCAGTTGGCAAAGCTATTGTGGATGCTGCTCTAGCTGCTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCAGGGTCTGGTGCAGTGGCAACTATTGATAACAAAAAGGTTTCTGTTGGTACATTGGAATGGATCACTAGGCATGGAGTTCTTAACAGTTTACATCAAGAGGTGGAGAAATTTAATAACCAATCCTTTGTCTATGTTGGAGTTGATGATACTTTAGCTGGCCTAATTTACTTCGAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATCTAGGTGTGTACATGCTATCAGGAGACAAGAGGAATGCTGCCGAGCATGTTGCTTCTCTGGTTGGAATTCCCAAAGAGAAGGTGCTATCTGAAGTGAAACCAGATGAGAAAAAGAAGTTCATAAGTGAACTACAGAAAGATAAGAACATTGTAGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTCTCACAGCTAGTTGATGCCTTGGAGCTTAGCAGGCTGACCATGAATACTGTAAAACAGAATCTTTGGTGGGCTTTCATCTACAACATTGTAGGAATTCCAATTGCAGCTGGAGCATTATTTCCCGTGAATGGAACTGTTCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGTGTAATGACCAACTCATTACTTTTGAGATTCAAATTTTCCACAAAGCAGAAACGAATATATAGTACATCGCCAAATACCAAAATCCATGTGGACTCTGATCTTGCACAACAAAACCAGAAAAGAAACCGACCTTATTAG 2829 0.4571 MDSAFSVTSTAHVSLFRALHRHFAGAPQRAFVRRNLKCVVASYNNRCRIPCSSASAPSRSSFRCFRGLLPGTPCRLRCISTSAASFASFTGGGNGGGGTSDSGGDGSSGGESGDASLQLVGDASQELSALSPDVIILDVSGMVCGGCAATVKRILENRPQVSSASVNLTTETAIIWPVSEAKNTPNWQKQLGEALAEHLTSCGYNSSLRDSTRDNFLQIFERKMEERHRQLKESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKMTPNMNTLVGLGALSSFTVSSLAVLVPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPPKARLLVNNGEPKAGSVVEVPSDSLSVGDQIIVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKVPGSEVAAGSINLNGTLTVEVQRPGGETSMAGIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGTHILPPALYQGSSVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTNIVTPTCIKNAISRQTEENALSDVEVLRLAAAVESNSIHPVGKAIVDAALAANCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVLNSLHQEVEKFNNQSFVYVGVDDTLAGLIYFEDEIREDARDVVDRLSKQNLGVYMLSGDKRNAAEHVASLVGIPKEKVLSEVKPDEKKKFISELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQLVDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGALFPVNGTVLTPSIAGALMGLSSIGVMTNSLLLRFKFSTKQKRIYSTSPNTKIHVDSDLAQQNQKRNRPY* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02848 942 FunFam Copper-transporting ATPase PAA1, chloroplastic 133 208 - -
Lapu3g02848 942 Gene3D - 594 727 IPR023299 GO:0000166
Lapu3g02848 942 NCBIfam copper-translocating P-type ATPase 285 906 - -
Lapu3g02848 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 585 591 IPR018303 -
Lapu3g02848 942 Pfam haloacid dehalogenase-like hydrolase 579 808 - -
Lapu3g02848 942 Gene3D - 574 846 IPR023214 -
Lapu3g02848 942 NCBIfam heavy metal translocating P-type ATPase 303 905 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lapu3g02848 942 NCBIfam HAD-IC family P-type ATPase 667 875 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g02848 942 NCBIfam HAD-IC family P-type ATPase 341 604 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g02848 942 Gene3D - 134 211 - -
Lapu3g02848 942 Gene3D - 353 476 - -
Lapu3g02848 942 FunFam Copper-transporting ATPase PAA1 chloroplastic 712 863 - -
Lapu3g02848 942 SFLD p-type atpase 566 846 IPR044492 -
Lapu3g02848 942 PANTHER ATP7, ISOFORM B 128 907 - -
Lapu3g02848 942 PRINTS P-type cation-transporting ATPase superfamily signature 719 730 - -
Lapu3g02848 942 PRINTS P-type cation-transporting ATPase superfamily signature 796 815 - -
Lapu3g02848 942 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Lapu3g02848 942 PRINTS P-type cation-transporting ATPase superfamily signature 741 751 - -
Lapu3g02848 942 PRINTS P-type cation-transporting ATPase superfamily signature 819 831 - -
Lapu3g02848 942 PRINTS P-type cation-transporting ATPase superfamily signature 583 597 - -
Lapu3g02848 942 ProSiteProfiles Heavy-metal-associated domain profile. 133 207 IPR006121 GO:0046872
Lapu3g02848 942 Pfam E1-E2 ATPase 367 563 - -
Lapu3g02848 942 MobiDBLite consensus disorder prediction 95 115 - -
Lapu3g02848 942 FunFam Copper-transporting ATPase 1, putative 354 476 - -
Lapu3g02848 942 PRINTS Copper-transporting ATPase signature 288 307 - -
Lapu3g02848 942 PRINTS Copper-transporting ATPase signature 773 790 - -
Lapu3g02848 942 PRINTS Copper-transporting ATPase signature 336 355 - -
Lapu3g02848 942 PRINTS Copper-transporting ATPase signature 566 581 - -
Lapu3g02848 942 SUPERFAMILY HMA, heavy metal-associated domain 135 207 IPR036163 GO:0046872
Lapu3g02848 942 SFLD Haloacid Dehalogenase 566 846 - -
Lapu3g02848 942 FunFam Copper-transporting ATPase PAA1 chloroplastic 594 727 - -
Lapu3g02848 942 Pfam Heavy-metal-associated domain 137 204 IPR006121 GO:0046872
Lapu3g02848 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 333 884 IPR023298 -
Lapu3g02848 942 SUPERFAMILY HAD-like 581 903 IPR036412 -
Lapu3g02848 942 CDD HMA 137 204 IPR006121 GO:0046872
Lapu3g02848 942 CDD P-type_ATPase_HM 238 904 - -
Lapu3g02848 942 ProSitePatterns Heavy-metal-associated domain. 139 168 IPR017969 GO:0046872
Lapu3g02848 942 SUPERFAMILY Calcium ATPase, transduction domain A 383 472 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02848 Lapu-Chr3 51347818 51378989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02848 285 906 Primary Pumps ATPases AT1G63440 39.403 2.96e-123 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02848 K17686 - gmx:100796210 1598.18