Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02829 ATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGCAAGGTTTCTGTATGACACCTACTGAACGTTTGCTTGTATATCCTTTCATGGTTAACGGAAGTGTAGCTTCATGTTTACGAGATCGTCCCCAAGCACAAGCACCACTTGAATGGGCAAAACGGAAGCGTATTGCTCTAGGAGCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGATCCGAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCAAAGCTCATGGATTACAAAGATACTCATGTTACTACTGCGGTACGTGGTACTATTGGACATATAGCACCCGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTCATGCTTCTTGAACTGATAACTGGACAGAGGGCTTTTGATTTAGCAAGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTGAAAGCACTTCTGAAAGACAAGCGGTTGGAGACACTGGTGGATGCAGATTTGGAGGGAAATTATGAAGAGGAGGAAGTAGAGGAATTAATCCAAGTGGCCTTGCTATGCACACAAAGCTCCCCTTTGGAAAGACCAAAGATGTCTGAGGTGGTGAGAATTTTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAGAAATGGTGGCAGAGAGAGGATAAGATCCAACAAAGTTTTGACCCTTCCAGTCTCCACCATGCTAATTGGCCATTATTATTAGACTCAACGTCAAATATTCCCCCAGACGAACTGTCAGGGCCTAGATGA 840 0.4369 MISMAVHRNLLRLQGFCMTPTERLLVYPFMVNGSVASCLRDRPQAQAPLEWAKRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKDKRLETLVDADLEGNYEEEEVEELIQVALLCTQSSPLERPKMSEVVRILEGEGLAEKWEKWWQREDKIQQSFDPSSLHHANWPLLLDSTSNIPPDELSGPR* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02829 279 FunFam Somatic embryogenesis receptor-like kinase 1 30 248 - -
Lapu3g02829 279 Gene3D Transferase(Phosphotransferase) domain 1 31 247 - -
Lapu3g02829 279 PIRSF ILK 1 248 - -
Lapu3g02829 279 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 238 - -
Lapu3g02829 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Lapu3g02829 279 SUPERFAMILY Protein kinase-like (PK-like) 5 228 IPR011009 -
Lapu3g02829 279 SMART serkin_6 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02829 279 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Lapu3g02829 279 Pfam Protein kinase domain 5 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02829 279 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02829 Lapu-Chr3 51185199 51198694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02829 1 279 Receptor kinase-like Gene Family AT4G33430 81.495 1.85e-164 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lapu3g02829 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02829 K13416 - gmx:100804180 512.686