Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02815 ATGTCTGATGTGGAAGAGTATCGTTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTTTGGCAAGCTTGTTGAGGCAAAGGTTGTTGTTGACAAGTTCTCTGGGCGATCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACGATTACTGTTGATAGAGCCCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTTTGGAGGTGGAGGGGGCCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGTGGAAAGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTGGTGGTGGTCACTATGGTCCAGATAGAAATGCAGATCGTTCTTCAGGGGGGCGCAACAGGGATGGTGGTAGTCATGGAGATTCTGGAAATGATCGATATTATCGTGATCGTGCAGGACCGTACGAGCGAGAGCGACGGGGATCAGGAGGCTTTCGTTGA 630 0.4778 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDFGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGKYGGRESRYGGSSGGGHYGPDRNADRSSGGRNRDGGSHGDSGNDRYYRDRAGPYERERRGSGGFR* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02815 209 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 203 - -
Lapu3g02815 209 MobiDBLite consensus disorder prediction 88 111 - -
Lapu3g02815 209 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Lapu3g02815 209 CDD RRM2_NsCP33_like 8 83 - -
Lapu3g02815 209 Gene3D - 2 118 IPR012677 -
Lapu3g02815 209 MobiDBLite consensus disorder prediction 76 209 - -
Lapu3g02815 209 FunFam Glycine-rich RNA-binding protein 10 119 177 - -
Lapu3g02815 209 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Lapu3g02815 209 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lapu3g02815 209 MobiDBLite consensus disorder prediction 168 209 - -
Lapu3g02815 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lapu3g02815 209 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
Lapu3g02815 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lapu3g02815 209 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Lapu3g02815 209 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lapu3g02815 209 Gene3D - 119 177 - -
Lapu3g02815 209 SUPERFAMILY Retrovirus zinc finger-like domains 105 142 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02815 Lapu-Chr3 51059851 51061211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02815 10 93 Eukaryotic Initiation Factors Gene Family AT1G22760 35.714 2.28e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02815 - - gmx:100815224 289.271