Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02800 ATGGGTAGAGGCCAAAACCCCACAAAGATGGAATTTGATCTCTCTTTGAAGATAGATACTGATGATCAACAAAAAGCAGAAGTAGATGAGCAAGTGAAAGACTATAACCAGGAAGAAATGGCTCAGATTCCGGATAATAACAAGGAAGAAGTCCCTGAACCTACAGCTGGTGAAATAGAAGATGATGCATCAGTTGTAGAAACATCTTTGCAACATAACTCAAAAACAAAAGAGTTAAGTGTCCTACAAATGGAGATGGAAAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAGATGAAATTCTCAGCTATACAGGAAAACAATAAACGAAAGGATCATGAAATTTCTCTCTCACTTCAAAACATTGCGACCACCAGCGGTGAAGGACCATCAAGAATTCTTGAGATTGTTAATAAAAAAATCCAAAGTGCTCCATCTCCTCCGAACACTGATGATGATAGTTTAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTGCAACCAAGCACAAGTCAAAAAGAAAGTGATGTGGTGGGAAACAAGGAAGACAGAAAAGATCAACAATTAGCAAGTTTTGTATCAGTGCAGAACAAACTACAGCGGACACATGAGTTGCCCGGTATTACTAACCATGCTATGTCCCCTCCAAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAAGCTGCCACAATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATTGCAAAGGGAAATCCATGTCCACGAGCCTATTATCGTTGCACTGTAGCCCCGGGCTGCCCCGTTAGGAAACAGGTACAAAGATGTATAGATGACATGTCCATTCTTATTACAACCTATGAAGGGACACATAATCATCCACTCCCTGTGGGTGCAACTGCCATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGATTCAAGCAACCCTATTTCAGATGGCACCTCTAGTTTCACTCAGTCACCCCTTCCTTACAACACCTTCCACCCATTAAACCCAGCTTCAAATTTTAGGAGCATAAACCCCAGTGATCCATCCAAAGGGGTTGTTCTTGATCTCACCAGCAACCTCAGTGAACCACTACGTTTTTCTACTGGTAGCTCCTCCAATACCACAGCTGATACTCGCTTTTCTTGGATCCCAAACAAATACCAAGGTGGTGGTGCAATTACAATGAACAACAATTTTCACAAGCCTAGACCAGTGGATATTCAGGATAGAATTTGGAAAGGAGAAGAAAGCAAGCCACTAGATGACAATGTGTCCGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCTGCAGCCATAACATCTCTAATGAATAAAGAGAGCCACACTGCTACTCATCCTATAGGGACTTCCTTTGGTCCTAGGAGTGGCCAAAATGGTAGCTAG 1464 0.4221 MGRGQNPTKMEFDLSLKIDTDDQQKAEVDEQVKDYNQEEMAQIPDNNKEEVPEPTAGEIEDDASVVETSLQHNSKTKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQNIATTSGEGPSRILEIVNKKIQSAPSPPNTDDDSLSESELGLSLRLQPSTSQKESDVVGNKEDRKDQQLASFVSVQNKLQRTHELPGITNHAMSPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSSFTQSPLPYNTFHPLNPASNFRSINPSDPSKGVVLDLTSNLSEPLRFSTGSSSNTTADTRFSWIPNKYQGGGAITMNNNFHKPRPVDIQDRIWKGEESKPLDDNVSAIASDPKFRVAVAAAITSLMNKESHTATHPIGTSFGPRSGQNGS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02800 487 Coils Coil 72 106 - -
Lapu3g02800 487 MobiDBLite consensus disorder prediction 155 199 - -
Lapu3g02800 487 Gene3D WRKY domain 231 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g02800 487 Pfam WRKY DNA -binding domain 247 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g02800 487 SUPERFAMILY WRKY DNA-binding domain 239 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g02800 487 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 466 IPR044810 GO:0003700
Lapu3g02800 487 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g02800 487 FunFam probable WRKY transcription factor 31 231 308 - -
Lapu3g02800 487 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g02800 487 MobiDBLite consensus disorder prediction 1 26 - -
Lapu3g02800 487 MobiDBLite consensus disorder prediction 155 188 - -
Lapu3g02800 487 MobiDBLite consensus disorder prediction 466 487 - -
Lapu3g02800 487 Coils Coil 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02800 Lapu-Chr3 50900062 50902787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02800 82 369 WRKY Transcription Factor Family AT1G68150 51.827 4.35e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu3g02800 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02800 - - var:108321024 817.379