Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02794 ATGTGCAACATCCTTGGCCCAATTATGGACAACTATCAAGGTGATTTAGGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCACCGGAACTTCATCATCTGAAGCTTGTGCTCCCTTTTCTCTCGATCACTGGCAGTTCTCTTCTGTTTTGGAAGGGTTTCATAGCAACTTTGGCGATCCATTCTCTAACACTAGAGATCCCTTTCTACATGAGCTTGAATTGCCTGCAGGCTCTGCTGCCTACTTTAACAGCACAACAAGTTCTGCAGAAATGAGCAGTTCTGGGGCATTGGAAGAAGCAACAACTTGTTTTGGTGGTGGGGTTGCTGCTAATAGTAATAGTTGCGTTTTGAAACAAACAATTTTTGAGGATGATGACATGAGAAGGCCTTGTAATAGCATATTGTCAAACATGATTCAGATCTCTCCCCCCAATGATAAGTTACCCATCTCGCCAGTGGTGGATGCTTTGTCAAGGCCACTCAAGCCTTCTGGTGTGGTTTTAGGTGATAACATGATTAATGTGAAGACCACTGAAGATGATTGCTTGGTGGGCAACAGCAACACAAAAGAAATAATGCAGATCTCATCTCCACGGAATCCAGGTCTTAAGAGAAGGAAGAGCCAGGCAAAGAAGTCGATTTGTGTTCCTGCACCAGCTGCGCCAAACAGCAGACAAAGTGGCGAGGTAGTCCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCCCTGCCAGAAAACAAGTTGAGAGGAGCAGAACAGATCCAAACCTGTTGGTTATTACTTACACGTCAGAGCACAACCATCCATGGCCAACTCACAGAAATGCTCTCGCCGGTTCTTCTCGATCCCAACCTTCATCCAAGGGCAACAACATTGGTGCTTCAAAGAATTCAGAAACCAGTCCCCAAAACGAGGAAGAGCAGGATGAGGAGAGCAACAGTGACAGCAATAATGTAAATAACAGTGCATGTGTTCTGGAAGAGAAGCAGCTTGACATGGATGATGGAGAATTCAGTGATATTGGACTCACTTACAAGCCAATATCTAAGATGAAGAGCTACCAACAACCTGATCAGGGTTTGTTTTCAGAATTGGGTGATATAGAAAAAGCTCACTCACTAAACCTAATGTCTCCACCACAAGGTTTTGATGATCAGCAAAGGGAATCCAACGCTTTAGATTCATTCCATATCTTTGACTGGAGCGGTGATAACAACACCAAGTTCCACCTCATTTGA 1317 0.4434 MCNILGPIMDNYQGDLGDIIRASGASYGSCSTGTSSSEACAPFSLDHWQFSSVLEGFHSNFGDPFSNTRDPFLHELELPAGSAAYFNSTTSSAEMSSSGALEEATTCFGGGVAANSNSCVLKQTIFEDDDMRRPCNSILSNMIQISPPNDKLPISPVVDALSRPLKPSGVVLGDNMINVKTTEDDCLVGNSNTKEIMQISSPRNPGLKRRKSQAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNLLVITYTSEHNHPWPTHRNALAGSSRSQPSSKGNNIGASKNSETSPQNEEEQDEESNSDSNNVNNSACVLEEKQLDMDDGEFSDIGLTYKPISKMKSYQQPDQGLFSELGDIEKAHSLNLMSPPQGFDDQQRESNALDSFHIFDWSGDNNTKFHLI* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02794 438 MobiDBLite consensus disorder prediction 280 327 - -
Lapu3g02794 438 FunFam probable WRKY transcription factor 14 210 290 - -
Lapu3g02794 438 SMART WRKY_cls 236 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g02794 438 MobiDBLite consensus disorder prediction 261 346 - -
Lapu3g02794 438 SUPERFAMILY WRKY DNA-binding domain 234 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g02794 438 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 400 IPR044810 GO:0003700
Lapu3g02794 438 ProSiteProfiles WRKY domain profile. 231 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g02794 438 Gene3D WRKY domain 210 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g02794 438 MobiDBLite consensus disorder prediction 199 234 - -
Lapu3g02794 438 Pfam WRKY DNA -binding domain 238 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02794 Lapu-Chr3 50823126 50827585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02794 1 408 WRKY Transcription Factor Family AT2G34830 42.117 1.03e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu3g02794 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02794 - - vra:106752855 689.878