Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02749 ATGATGCTGTCCCTAAAGATTAGTTTGACTACAGTCATTGTCCTTTCCATTGCATTCATAGTTTCCCATGCTGAAACAAGCTTAGATGTTGAAATTGAAGCCTTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAATGGGGCTCTAGCAGACTGGGTAGACAGTCACAGCCACTGCAACTGGTCTGGCATTGCATGTGACCCATCTTCAGATCGTGTCATTTCTATTTCACTGGTTAGTCTTCAACTCCAAGGGGAGATTTCACCTTTCATTGGGAACATTTCAGGCCTTCAGGTTTTTGACATAACTTCAAACTCATTCACTGGCTACATTCCTGCTCAGCTCAATCTTAATACTCAACTTACAGAACTCATTCTTTTTAACAATTCTCTTTCGGGTCCTATCCCTCCACAGTTAGGTAGCCTTAAAAGCCTGCAGTATTTGGATTTAGGTAACAACTTCTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTTTTGGGTATTGCTTTTAATTTCAACAACCTTACTGGCAGAATCCCATCAAACATTGGGAATCTAGTTAACCTTGTACAGGTTGCAGGTTTTGGAAATAATTTGGTAGGATCTATACCTCTTTCCGTAGGTCAATTAGGAGCTTTGCGAGCTCTTGATTTTAGCCAAAACAAGTTATCAGGTGTAATACCTCGAGAGATTGGAAACCTGACCAAATTAGAATACCTTGAATTGTTCCAAAATTCCCTGAGTGGTAAAATTCCTTTCGAACTTGGTAAGTGTAGCAATCTTTTAAGCCTTGAGTTATCTGGCAATCAGCTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAGTTGGAGAAATTGAAGTTACATCAGAATAACTTGAATTCCACCATCCCATCAGCCATATTCCAGTTGAAATCATTAACACATCTAGGTCTCTCACAGAATAACTTACAGGGAACAATATCTTCTGAGATTGGATATATGAACTCTTTGCAAGTTCTAACCATGCACTTAAATAAGTTAACTGGGGAGATCCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTCCTCTCAGGTGAACTTCCTTCAAATTTGGGTGTGCTTCATAATTTGCAGTATCTTGTTTTGAACTCCAACCACTTTCATGGATCCATTCCCTCCAGCATTACCAATTGTACTAGACTGGTAAATGTAAGTTTGTCTTTTAATGATTTAAGTGGGAAAATTCCTCAGGGTTTTTCCAGGTCGCCAAATCTTACTTTCCTGTCTCTTACGTCTAACAAAATGACTGGGGAAATCCCAGATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAATAACTTCAGTGGATTGATAAAATCAGGTATCCAAAACCTGTCTAAACTTCAACGCTTGCAGTTGAATGTAAATTCTTTCACAGGACCAATTCCACCAGAGATTGGAAACTTGAATCAACTCATTACTCTATCCCTCTCTGAAAATAAGTTTTCTGGTCAAATTCCTCCAGAACTGTCCAAACTTTCTCGGCTTCAGGGGCTCACTCTTCATGCCAATGCATTAGAAGGTACAATACCTGATGAGCTCTCTGAATTAAAAGGACTAACCGAACTTTTCATGCATCAAAACAAATTGGTAGGTCAAATACCTGATAGTCTCTCAAAGCTTGAGATGCTTTCCTACTTAGACCTTCATAGCAACAAACTTAATGGGTCCATCCCAAGAAGCATGGGGAAGCTAAAGCAACTTTTAGTTTTGGATCTCTCTCACAACCAGCTCACAGGATCAATGCCCGGGGATGTCATTGCAAACTTAAAAAACATGCAGATGTATCTCAACCTTTCTTACAACCACTTGGTCGGAAATCTTTCAACTGAGTTGGGCATGTTGGAAATGATACAAGCTATTGACATTTCAAACAATAACCTTTCAGGTTTCATTCCTAAAACACTTGCTGGGTGCCGAAATCTGTTTAATCTTGATTTTTCAGGAAACAGTATTTCAGGTCCTATTCCCGCAGATGCGTTTAGTCACATGGACTTGCTTGAAAGCTTAAACCTCTCAAGAAACCATTTAGATGGTGAAATCCCTGAAATACTGGCAGAACTTGATCATCTTAGTTCCCTAGATCTTTCTCAGAATGATTTGAAGGGAATTATTCCTGAGGGCTTTGCCAAACTTTCCAACTTGATGCATCTCAACCTTTCCTTCAATCAACTCGAAGGTCCTGTTCCTAAGACCGGAATATTTACACACATCAATGCATCTAGTGTGATGGGAAACCAGGATCTTTGTGGAACTAAGTTCTTATCGCCATGCAGGGAGACAAAACATTCACTTTCCAAGAAGGGCATATCTATTATTGCTTCACTTGGATCTCTAGCTATACTTCTAGTGTTAGTGATTCTAATTCTCATTCGTGGCACCAAACTCTGTAATTCTAAAGGAAGAGATAGTGTAAATCATGAACCAGACTACACTTCAGCATTGGCACTTAAAAGGTTCAATCCAAAGGAATTGGAGAATGCCACTAGATTTTTCAGTGAGGACAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAACTCGAAGATGGCCAGGTTGTTGCCATAAAACGATTGAATTTGCAACAATTCTCTGCCAACACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGTTGAGACATAGGAATTTGATCAAGGTACTTGGATATGCCTGGCAGAGTGGGAAAATGAAGGCTTTGGTTCTGGAGTACATGGAAAATGGAAATTTGAATAGCATCATACACGGCAACGGGGTAGATCAGTCTGTGATCTCTAGGTGGACATTATCTGAAAGAGTCCGAATATTCGTATCTATTGCTAAAGCATTGGATTATTTGCACTCGGGTTATCATATTCCCATTGTGCACTGTGATTTAAAGCCTTCTAACATTCTTTTAGATAGAGAGTGGGAAGCTCATGTCAGTGACTTCGGAACAGCTCGAATACTTGGTCTTCATCTGCAAGATGGTAGTACCCTGTCGTCATCAGTAGCTGTGCAAGGTACAGTTGGCTACATGGCACCAGAATTTGCCTACACGAGGAAAGTGACCACTAAAGCAGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCGACAGGACTCTCGGAAGAGAATGGTTTGCCAATCACTTTGCGTGAATTAGTGGCAAAAGCCTTTGCAAATGGAATTGAACATCTTGAAAATATTGTGGATCCTTTGTTGACCTGGAATGTTACAAAAGACCATGATGAAGCGTTGGCAGAGCTCTTTAAGCTATCTCTGTGCTGCACCCTACCTGATCCTGAACAGAGACCCTATGCGAATGAGGTGTTATCTGCCCTTGAGAAGCTTCAAACAACATTGTCTTGTTAA 3492 0.4038 MMLSLKISLTTVIVLSIAFIVSHAETSLDVEIEALKAFKNSITGDPNGALADWVDSHSHCNWSGIACDPSSDRVISISLVSLQLQGEISPFIGNISGLQVFDITSNSFTGYIPAQLNLNTQLTELILFNNSLSGPIPPQLGSLKSLQYLDLGNNFLNGSLPDSIFNCTSFLGIAFNFNNLTGRIPSNIGNLVNLVQVAGFGNNLVGSIPLSVGQLGALRALDFSQNKLSGVIPREIGNLTKLEYLELFQNSLSGKIPFELGKCSNLLSLELSGNQLIGSIPPELGNLVQLEKLKLHQNNLNSTIPSAIFQLKSLTHLGLSQNNLQGTISSEIGYMNSLQVLTMHLNKLTGEIPSSITNLTNLTYLSMSQNLLSGELPSNLGVLHNLQYLVLNSNHFHGSIPSSITNCTRLVNVSLSFNDLSGKIPQGFSRSPNLTFLSLTSNKMTGEIPDDLYNCSNLSTLSLAMNNFSGLIKSGIQNLSKLQRLQLNVNSFTGPIPPEIGNLNQLITLSLSENKFSGQIPPELSKLSRLQGLTLHANALEGTIPDELSELKGLTELFMHQNKLVGQIPDSLSKLEMLSYLDLHSNKLNGSIPRSMGKLKQLLVLDLSHNQLTGSMPGDVIANLKNMQMYLNLSYNHLVGNLSTELGMLEMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNSISGPIPADAFSHMDLLESLNLSRNHLDGEIPEILAELDHLSSLDLSQNDLKGIIPEGFAKLSNLMHLNLSFNQLEGPVPKTGIFTHINASSVMGNQDLCGTKFLSPCRETKHSLSKKGISIIASLGSLAILLVLVILILIRGTKLCNSKGRDSVNHEPDYTSALALKRFNPKELENATRFFSEDSIIGASSLSTVYKGQLEDGQVVAIKRLNLQQFSANTDKIFKREANTLSQLRHRNLIKVLGYAWQSGKMKALVLEYMENGNLNSIIHGNGVDQSVISRWTLSERVRIFVSIAKALDYLHSGYHIPIVHCDLKPSNILLDREWEAHVSDFGTARILGLHLQDGSTLSSSVAVQGTVGYMAPEFAYTRKVTTKADVFSFGIIVMEFLTKRRPTGLSEENGLPITLRELVAKAFANGIEHLENIVDPLLTWNVTKDHDEALAELFKLSLCCTLPDPEQRPYANEVLSALEKLQTTLSC* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02749 1163 Pfam Protein kinase domain 867 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02749 1163 Gene3D Ribonuclease Inhibitor 619 800 IPR032675 -
Lapu3g02749 1163 Gene3D Ribonuclease Inhibitor 415 618 IPR032675 -
Lapu3g02749 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672|GO:0006468
Lapu3g02749 1163 FunFam Inactive leucine-rich repeat receptor-like protein kinase 450 546 - -
Lapu3g02749 1163 CDD STKc_IRAK 872 1157 - -
Lapu3g02749 1163 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Lapu3g02749 1163 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Lapu3g02749 1163 Gene3D Phosphorylase Kinase; domain 1 831 944 - -
Lapu3g02749 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 433 1151 - -
Lapu3g02749 1163 FunFam Leucine-rich repeat receptor protein kinase EMS1 354 449 - -
Lapu3g02749 1163 SUPERFAMILY RNI-like 76 373 - -
Lapu3g02749 1163 SUPERFAMILY RNI-like 317 760 - -
Lapu3g02749 1163 Gene3D Ribonuclease Inhibitor 191 264 IPR032675 -
Lapu3g02749 1163 PRINTS Leucine-rich repeat signature 602 615 - -
Lapu3g02749 1163 PRINTS Leucine-rich repeat signature 722 735 - -
Lapu3g02749 1163 SUPERFAMILY Protein kinase-like (PK-like) 843 1159 IPR011009 -
Lapu3g02749 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 28 184 - -
Lapu3g02749 1163 Gene3D Transferase(Phosphotransferase) domain 1 945 1162 - -
Lapu3g02749 1163 SMART LRR_typ_2 479 503 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 722 745 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 575 598 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 359 381 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 698 721 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 215 239 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 383 407 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 599 623 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 527 551 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 287 311 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 143 167 IPR003591 -
Lapu3g02749 1163 SMART LRR_typ_2 746 771 IPR003591 -
Lapu3g02749 1163 ProSiteProfiles Protein kinase domain profile. 866 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02749 1163 FunFam Leucine-rich receptor-like protein kinase family protein 260 353 - -
Lapu3g02749 1163 Gene3D Ribonuclease Inhibitor 265 414 IPR032675 -
Lapu3g02749 1163 FunFam Leucine-rich repeat receptor-like protein kinase TDR 552 794 - -
Lapu3g02749 1163 Pfam Leucine rich repeat 721 759 IPR001611 GO:0005515
Lapu3g02749 1163 Pfam Leucine rich repeat 529 588 IPR001611 GO:0005515
Lapu3g02749 1163 Pfam Leucine rich repeat 265 324 IPR001611 GO:0005515
Lapu3g02749 1163 Pfam Leucine rich repeat 653 711 IPR001611 GO:0005515
Lapu3g02749 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 827 944 - -
Lapu3g02749 1163 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515
Lapu3g02749 1163 SMART serkin_6 866 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02749 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 945 1162 - -
Lapu3g02749 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 192 259 - -
Lapu3g02749 1163 SMART LRR_sd22_2 722 751 - -
Lapu3g02749 1163 SMART LRR_sd22_2 143 175 - -
Lapu3g02749 1163 SMART LRR_sd22_2 551 574 - -
Lapu3g02749 1163 SMART LRR_sd22_2 599 626 - -
Lapu3g02749 1163 SMART LRR_sd22_2 215 247 - -
Lapu3g02749 1163 SMART LRR_sd22_2 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02749 Lapu-Chr3 50291880 50296232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02749 5 1158 Receptor kinase-like Gene Family AT5G46330 53.168 0.0 1144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lapu3g02749 Pkinase 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02749 K13420 - gmx:100788119 1959.11