Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02747 ATGGCGAAAAGGGCAAAAGGGTCTCACTCTACTTCTTCGGCCTCTGCCTCTGCCGCTTCCGGTAAACTAGTGTTGAGGATTAAATCAAATGAGGGAATCAAGAGATCGGTGCGGCAGACTAATTCAAGAAAGAAACCCAAAGCAAAACTAAAGAAGAACAAGCGGAAGTTTGATGCTATGAAACCAAAGAAACCTCCTACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATGTAGCAACAGAAAAACGTGCAGAATTTGATAGATCAATGGCAGAATATAACAAGAAAATAGAAAGTGGAGAGTTTGACAAAACTGATGAGGAATCAGAGTTTGATGAGTAA 453 0.4018 MAKRAKGSHSTSSASASAASGKLVLRIKSNEGIKRSVRQTNSRKKPKAKLKKNKRKFDAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATEKRAEFDRSMAEYNKKIESGEFDKTDEESEFDE* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02747 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Lapu3g02747 150 SUPERFAMILY HMG-box 53 134 IPR036910 -
Lapu3g02747 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Lapu3g02747 150 SMART hmgende2 61 132 IPR009071 -
Lapu3g02747 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 36 147 IPR031061 -
Lapu3g02747 150 MobiDBLite consensus disorder prediction 39 59 - -
Lapu3g02747 150 Gene3D High mobility group box domain 56 146 IPR036910 -
Lapu3g02747 150 MobiDBLite consensus disorder prediction 1 62 - -
Lapu3g02747 150 CDD HMG-box_AtHMGB1-like 63 123 - -
Lapu3g02747 150 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02747 Lapu-Chr3 50169958 50177825 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lapu3g02747 HMG_box 1.2e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02747 - - vum:124844238 272.322