Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02744 ATGGAAGGGAAAATGACCAAACAGAAACAAAAACGAGAGATTAAGAAGATTGAGAATAATAGAGATCTCCTCATCACTTTCACAAAAAGAAAACGTGACATTCACAAGAAAGCCAGTGAGATATCAACTCTTTGTGGAGCAAAAGTTGATATACTTATGCATACTTCATCTGGAAATTGGTTTAGTTACGGGGAACCTTCTCACCAAGCGATGACAATGTCTAATGATAAACAAAACCCTATTGAAGATGTCAATAATCAGCTTGTGGATGATCAAACCCAATTAGAGATAGATGAACTCTGTGAAAAAAATAAGACACTTATGGATCAAATGTACTATGAGGAAGAACGAGAGAAAGAACTTACAGAGATTATGAAGACAAGAAACGTCCATGGTTGGTGGGCGGCCAAAGATCTTAATCGTGAACAAGCCAAAGAAATGAGGGCTTCATTGATGGAAATCAAACAGAAATTGGAAAAAGAACTTTCTATCAAGTGTAGAGAGAAAGAGAATTCTTCTCACGCTCCCTCAAATCAAGTGAATGGATTTCACCTTTGCCCTAATTACAAAAGAGGAAGTAGCATATCTGAAGTTGTCTTTGGTGCTAACAATGAAGCTTGGGGAATTGCTGCAACTGAAAGCATTTTTCCTGATATTTCTTTTAGTCTCACAGATGAAGGGAAAGAATTCAATTTTTTTCCATATGGTGAACGTAGGGAAGATTTATTTGATATTGTTTATCCTCAGAAAAATCTTTATCATGGATACAGTTTTTTTGTTGATGATCCAAATGATAGTGGTAAGTCTGCTTTTGCTTTTTTTCCTGCAAAACCAATGCAAGGACTTAACCCTGTCGATGCAAATGGAAGTATCTCATCATTTTCAAATCAATTCCAAGGAGATAACTTATTTCTACCCAATCCAAATAATGAGACTATTGAAATAAGAGGTAATGAGAATGTTGGTGGAAACGATAGTGGTGCTCTCTCCCTCCCCTTTGAATCAACAATAGGAGACTAA 1020 0.3618 MEGKMTKQKQKREIKKIENNRDLLITFTKRKRDIHKKASEISTLCGAKVDILMHTSSGNWFSYGEPSHQAMTMSNDKQNPIEDVNNQLVDDQTQLEIDELCEKNKTLMDQMYYEEEREKELTEIMKTRNVHGWWAAKDLNREQAKEMRASLMEIKQKLEKELSIKCREKENSSHAPSNQVNGFHLCPNYKRGSSISEVVFGANNEAWGIAATESIFPDISFSLTDEGKEFNFFPYGERREDLFDIVYPQKNLYHGYSFFVDDPNDSGKSAFAFFPAKPMQGLNPVDANGSISSFSNQFQGDNLFLPNPNNETIEIRGNENVGGNDSGALSLPFESTIGD* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02744 339 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Lapu3g02744 339 Coils Coil 141 161 - -
Lapu3g02744 339 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Lapu3g02744 339 PANTHER MADS BOX PROTEIN 9 161 - -
Lapu3g02744 339 SUPERFAMILY SRF-like 8 73 IPR036879 GO:0003677|GO:0046983
Lapu3g02744 339 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lapu3g02744 339 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lapu3g02744 339 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lapu3g02744 339 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Lapu3g02744 339 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02744 Lapu-Chr3 50152144 50153349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02744 1 167 Type I MADS-box Gene Family AT1G28450 30.682 1.00e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g02744 SRF-TF 8.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02744 - K12412 ccaj:109813207 316.62