Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02730 ATGATGGCCGACGATCCAATGCCCACGCGCTGGTCTTTCCAGGACTTCAAATTTTATTATGATGCTAAGTTTGGTAGGAAGAAGGCCGAGAAGAACGGCGAGATTGCTGATAAAGCGGTGGTCAGTAATGGAGGTTCGTTGGGCGTTGTGTCCAATGGCAATCCGAGTGCAAAAAGGGTCTCGGAAATGGCTGTTTATGAGCAGTTTCGAACTGAGGGGCAGAACCATATTCATTCAAATGGATTTTCGCCCGTTAATATGGACGAAAGGCCGCAGAGATCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGAACTTTAGCAGAGAGCCTGAGTAGGGATATCATTCGTGGAAGTCCAGATGTGAAGTGGGAAAGTATCAAGGGGTTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTCGTGATGCCAATTAAGTATCCCAAGTACTTCACTGGTCTGTTGTCACCATGGAAGGGCATTCTCCTTTTTGGGCCACCGGGAACAGGAAAGACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCATCATCTGTAGTTAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCGCCCTCAACTATATTTTTAGACGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCTCGTAGCGAACATGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTTGTTCAGATGGATGGTTTGACCCGGACAGATGAACTAGTTTTTGTCTTAGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTATCCTTGTACCACTTCCAGAACCAGTAGCGAGGAGAGCAATGTTTGAGGAACTCCTTCCTCTACAGTCTGACGAGGAACCGATCCCCTATGATTTACTTGTGGATCAGACAGAAGGATATTCAGGGTCAGATATCCGATTACTCTGTAAAGAAACAGCAATGCAGCCCTTGAGACGCTTGATGTCACAACTTGAGCAGAGACAGGAGGAGCTGGTGCCTGAAGATGAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGATACAGCATTGAGAAACACAAGACCATCTGCTCATCTCCATGCGCACAAATACGACAAGTTCAATGCTGATTATGGTAGTCAAATACTACAATGA 1221 0.4521 MMADDPMPTRWSFQDFKFYYDAKFGRKKAEKNGEIADKAVVSNGGSLGVVSNGNPSAKRVSEMAVYEQFRTEGQNHIHSNGFSPVNMDERPQRSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLVQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLPLQSDEEPIPYDLLVDQTEGYSGSDIRLLCKETAMQPLRRLMSQLEQRQEELVPEDELPKVGPIRSEDIDTALRNTRPSAHLHAHKYDKFNADYGSQILQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02730 406 PANTHER AAA DOMAIN-CONTAINING 60 402 - -
Lapu3g02730 406 Pfam ATPase family associated with various cellular activities (AAA) 161 291 IPR003959 GO:0005524|GO:0016887
Lapu3g02730 406 Pfam AAA+ lid domain 319 355 IPR041569 -
Lapu3g02730 406 FunFam Katanin p60 ATPase-containing subunit A-like 2 293 382 - -
Lapu3g02730 406 FunFam Katanin p60 ATPase-containing subunit A-like 2 120 304 - -
Lapu3g02730 406 CDD RecA-like_VPS4-like 127 290 - -
Lapu3g02730 406 Gene3D - 293 382 - -
Lapu3g02730 406 Gene3D - 120 396 IPR027417 -
Lapu3g02730 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 387 IPR027417 -
Lapu3g02730 406 SMART AAA_5 157 294 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02730 Lapu-Chr3 50005491 50014738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02730 155 350 Calmodulin-binding Proteins AT3G56690 36.683 1.75e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02730 K07767 - gmx:100794098 713.761