Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu3g02707 | ATGGTCCTTGTGGCAGCCATTCTATGTGCCTTTGTGTGTGCTCTTGGCCTCAACACCATGTTACAATGTGTCTTCCAATGTGCTTCTCGCGTCCTCACACAACCTCGCCAATGGATTGCTTCTCGCAGGCTCAATTCTGGCCTCAAGAGGAAGGAAATGGTTGCTTTGCCAACCTCAACCTACACACACTCTTCTTCCTCTCCATCTTCATCACCACCTTCTACTTGTGTCATTTGCTTGGCTGAGTTCTCTGATGGGGACCCTATAAGGTTCCTCCCAAAGTGCAACCACTATTTCCATGTTCTTTGCATAGACAAGTGGCTCCTCTCTCACTCTTCTTGCCCTACTTGTAGGCACCTACTCAAGCCAAATGATCATCTTCAATCCTTACATATTGTCATAGCTTAG | 408 | 0.4706 | MVLVAAILCAFVCALGLNTMLQCVFQCASRVLTQPRQWIASRRLNSGLKRKEMVALPTSTYTHSSSSPSSSPPSTCVICLAEFSDGDPIRFLPKCNHYFHVLCIDKWLLSHSSCPTCRHLLKPNDHLQSLHIVIA* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu3g02707 | 135 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 2 | 122 | IPR044602 | GO:0016567|GO:0016740 | |
| Lapu3g02707 | 135 | SMART | ring_2 | 76 | 117 | IPR001841 | - | |
| Lapu3g02707 | 135 | SUPERFAMILY | RING/U-box | 75 | 127 | - | - | |
| Lapu3g02707 | 135 | Pfam | Ring finger domain | 75 | 118 | IPR001841 | - | |
| Lapu3g02707 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 124 | IPR013083 | - | |
| Lapu3g02707 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 76 | 118 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu3g02707 | Lapu-Chr3 | 49683232 | 49683732 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu3g02707 | 1 | 121 | C3H Transcription Factor Family | AT3G10910 | 43.411 | 5.07e-31 | 107 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu3g02707 | - | K19040 | gmx:100779286 | 231.491 |