Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02696 ATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGGAGAAAATATACCCTCTCTAAGGGATAACTTCCCTCAAACTCTCTCAGACCCTCCACCTCCATCACCTATGGTTGTAGGCAACACCACACACACTGATAATGGCCTTGAAGATAATATCAGGCTTTCTGTGGAAGAGCTCTCCTATAACCATCACAATCTACAACACCAAGATGTCTCTACCTATGCAAGTGGAGTCACTGCCACATCCATTGACATCCCTCATTCACAACATCTAGGTTTGAATATGGGGAACTCCTACATCAACAACACCAACAACATGGATAACCATTTGGTGCAAGAGGTCATTGATGCCCTTCCCTATCAGCAGTCCACTTGGGACCCTACTACTGTTCAGGAATTGCATGACATGGGCTATGCTAATCAAATAGAACAACAGCAACAAAATGACCAACAATTTCAGCAAATGGAGACTCAAAACTGCAGCCAAAGCTACAACCCCACTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCTCATCTTTGCACACCAATCCCACCATTTGCCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCACTTGCCTTTCTTGGAGACCTTCCAATAGGGTCGGAAAACGCAAGTGCATCCTCAGTTTTGTATGATCCTCTCTTTCATCTGAACCTTCCTCCACAGCCCCCAGCTCTCAGAGAGCTGTTTCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAACTCAAGGAATGGTTCACTCTTTGTAGGGGATGAGATAGAGGGAGATGGGAGTCAGCTTGACATGGGAGTTCTGGAATTCAGTAGGGTCACACCCTCTGTTGGCAAAGGAAGGGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGAAAATACAAAATCTTGAGAAATCTCATCCCAAACCCCACTAAGATTGATAGAGCATCCGTGGTGGGGGATGCCATTGACTATATAAGAGAGCTGATTAGAACAGTCAATGAACTCAAACTATTGGTAGAGAAGAAAAGGTATGGTAGAGAGAGGTGCAAGAGACCCAAAACAGAAGAAGATGCTGCTGAGAGCTGTAACATAAAACCTTTTGGTGATCCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTTCGGATTATAGATGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAAATCAACTGCTTGTTGTTTGTCTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCTTCAGTCTATGCAAGTGCCATAGCCAACAGGGTCATTGATGTTTTGGACTGTCAGTACACAGCATCCGTTCCACATACAAACAGCTACTAG 1539 0.447 MSTGDRPKMHEQTGCFDPNTMGENIPSLRDNFPQTLSDPPPPSPMVVGNTTHTDNGLEDNIRLSVEELSYNHHNLQHQDVSTYASGVTATSIDIPHSQHLGLNMGNSYINNTNNMDNHLVQEVIDALPYQQSTWDPTTVQELHDMGYANQIEQQQQNDQQFQQMETQNCSQSYNPTSILDPPYPSPDLLNLLHLPRCSASSLHTNPTICLTNPTQNTPNFQNPLAFLGDLPIGSENASASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFVGDEIEGDGSQLDMGVLEFSRVTPSVGKGRGGKATKHFATEKQRREQLNGKYKILRNLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGRERCKRPKTEEDAAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDCQYTASVPHTNSY* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02696 512 SMART finulus 320 369 IPR011598 GO:0046983
Lapu3g02696 512 MobiDBLite consensus disorder prediction 1 26 - -
Lapu3g02696 512 Gene3D - 312 385 IPR036638 GO:0046983
Lapu3g02696 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 380 IPR036638 GO:0046983
Lapu3g02696 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Lapu3g02696 512 PANTHER TRANSCRIPTION FACTOR BHLH91 8 504 IPR045895 GO:0006355|GO:0048658
Lapu3g02696 512 CDD bHLH_AtMYC1_like 319 383 IPR045896 -
Lapu3g02696 512 Pfam Helix-loop-helix DNA-binding domain 317 363 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02696 Lapu-Chr3 49604769 49606819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02696 9 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 37.453 1.32e-93 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02696 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02696 - - gmx:100782512 867.455