Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02683 ATGGTTACCCAACAGCCACAGCTTCAGGTTCAGCCTCAACAGCCTACACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGATTGCCGTTATTGGTTGAGTGGCAACTGCTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACGCAGGCAGCAACGCCTGGTGGACCATCTGTATCTGTACCCCCATCACAGATTCCAACAGCACCTGCAACACATGCACCTTATAATTCCAGTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGGCCTGCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCTGAGAATCCAAGTTTTAAGAAGCCTTTTGGTTCCAGTGAAAAGTATACTCAGGAAAGGAAAACTTCCCAAGCAAATGTTGCAAAGTCAGGTGGAGGCCCTGAACATAAACCTGCCGCAAAAGTTGAATCTGCTCCTCAAAGACATATGTTTGAATTGGAGAAGAAAATGCCACCACCGCCTGTAGGATTTGATAATGAGGTTTCTACATATAAGACAAGTTCTCCACCAGTAGCCAATGGCCCAACTGTAGCCCGGTCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCACAGTGGCAAGGACAGCGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTCCTTGTAGCCGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGCGCATTCTGGTGATTATGGTTTAGCAGCTGATATAGATAGGGAAAGATTTCGTGTGCCTCAAGGTTATGAGTCATATGATCACATGCAGGAACCATATGTTTGGGAGCAGCATAGGAAGGCTTCAGCCCATTTAGATAGAAGGGCTCGCCGCAGATCTGACAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGAAAGGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGGTCCTTCTCACGGAAGGACTCACTCCAGTTACCTCTGAATGACAGCTCCCTTGGTAATCGCTTCCGCGGTAGAATAAAACTTCCTGCAGATGGTGGTGCTGATCAGCTAGAGAGGGATGAGAGAGGGAGAATTAGGGGCCGGTTGTTGTCTGGAAGGTTGCAGGCCACTCAGCAGGGAAGGATCCATGATAGAATGCGAGGAAGGTTGCAAGATGACGAGAGGAGAAACTCAAAGGATCGATTGATGGGGAGAGAACTAATAGGTGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTTGCTGAGCTTAAAAATGGGAGGAACACTGAGAATAGGGAGCAACAATCACTGGGAAAGAGAGGAAGTCTGAGAGATGACCACCCACTAACTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTCTGAAGGAGAAGAGAGGAGGAGCTGGAGGCAGAGCTGGTGCAGACTCGGGGAATGGCAAATCATCTGATATTAAGAATGAAGAAGTTACCAATGGCTCAGATCCTACGCCCGTCACACAAAATGGAGTGCTTTCTGAAACCAAGGAATATGTCAACAATCAAAATAATGAAGAAGAATCCAAGATTGAGATCACTGATGCAGCTGGAGGAGACACTGAAGCAACTCATGGTCAATATGAGGAGGGAATGTACGATGAAGCCGGTGAAGATCAGTATTATGAAGGTGATGATCAGAGAGAAGCGGATTACGAGTATGAACAAGGTGATGAGGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAAGAGGAAGATTACATGGATGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2124 0.4557 MVTQQPQLQVQPQQPTPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATPGGPSVSVPPSQIPTAPATHAPYNSSKQAVPCFFFQKGLCLKGDRCAFMHGPAAPSTGNKVAAQVPVTSQGAENPSFKKPFGSSEKYTQERKTSQANVAKSGGGPEHKPAAKVESAPQRHMFELEKKMPPPPVGFDNEVSTYKTSSPPVANGPTVARSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLAHSGDYGLAADIDRERFRVPQGYESYDHMQEPYVWEQHRKASAHLDRRARRRSDSPENAEVSDLRHHLSKRRKVNGLKSVVSHDYALEGHGEEQSHRSFSRKDSLQLPLNDSSLGNRFRGRIKLPADGGADQLERDERGRIRGRLLSGRLQATQQGRIHDRMRGRLQDDERRNSKDRLMGRELIGGDRSDFAGPKSLAELKNGRNTENREQQSLGKRGSLRDDHPLTEDDLQFDGPKPLSEILKEKRGGAGGRAGADSGNGKSSDIKNEEVTNGSDPTPVTQNGVLSETKEYVNNQNNEEESKIEITDAAGGDTEATHGQYEEGMYDEAGEDQYYEGDDQREADYEYEQGDEGYYEYEQGEEGENQEEDYMDEEDGDDFAKKIGVIHS* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02683 707 MobiDBLite consensus disorder prediction 159 208 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 447 463 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 521 570 - -
Lapu3g02683 707 Pfam RNA-binding, Nab2-type zinc finger 122 142 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g02683 707 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Lapu3g02683 707 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Lapu3g02683 707 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Lapu3g02683 707 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Lapu3g02683 707 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Lapu3g02683 707 MobiDBLite consensus disorder prediction 406 608 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 475 503 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 159 191 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 363 386 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 363 388 - -
Lapu3g02683 707 Gene3D - 15 81 - -
Lapu3g02683 707 Pfam Zinc-finger containing family 25 80 IPR041686 -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 254 274 - -
Lapu3g02683 707 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Lapu3g02683 707 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 705 - -
Lapu3g02683 707 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Lapu3g02683 707 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Lapu3g02683 707 Gene3D - 113 191 - -
Lapu3g02683 707 MobiDBLite consensus disorder prediction 580 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02683 Lapu-Chr3 49473891 49478161 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu3g02683 zf-CCCH_3 4.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02683 - - gmx:102669253 1113.6