Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02678 ATGGAGGAGGAGTGCAACAAACTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAATATCCTATCACCACTGAACTACAAAATCGATGCGTGAATATGATAGCACGATTGTTCCATGCTGAGCTTAAAGGAGATGGAAACGCAATTGGAGCAGGAACTGTTGGATCATCAGAGGCCATAATGCTGGCGGGACTTGCATTCAAGAAGAAGTGGCAGAACAAGCAAAAGGAAGATGGCAAGCCTTATGATAAGCCTAATTTAGTTACTGGTTCCAACGTGCAAGTATGTTGGGAGAAATTTGCGAGGTATTTTGAAGTGGAGCTGAGGGAAGTGGAGGTGAGAGAAGGATACTACGTGATGGACCCTGCCAAAGCGGTTGAGCTGGTTGATGAAAACACTATCTGCGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAGTTTGAAGATGTGAAGCTCTTGAATGACTTGCTGCTACAAAAGAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCAAGTGGAGGGTTTATTGCTCCTTTCCTTTATCCAGAGCTGGAGTGGGATTTCAGACTGGAATTGGTGAAGAGCATAAATGTGAGTGGACACAAGTATGGGCTTGTTTATGCTGGTATTGGTTGGGTTATTTGGAGGACCAAGGATGACTTGCCACAAGACCTTGTCTTCCATATCAATTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCCAAAGGTTCCAGTCAGATCATCGCTCAATATTATCAGCTAGTTCGTCTTGGCCAAGAGGGTTATCGGAGCATAATGGAGAACTGCAGAGAAAACGCAATGGTGGTGAAGGAAGAATTGGAGAAGAGTGGACGGTTTAACATACTCTCAAAAGACAAAGGTGTTCCTGTGGTGGCATTTTCTCTGAAAGACAGAAGGCAGTACGATGAATACAAGATATCGGAGATGCTGAGACGACACGGTTGGATCGTGCCAGCTTATCCAATGCCACCTGCTGCTCAGCACATCAATGTGCTCCGTGTGGTGATCAGGGCGGAGTTTTCACGCACCCTTGCTCAACGCCTTGTGTTGGACATACGCAATGTGTTGCATGAGCTTGAAAAGATGCATCTCCCCATAACAGTGAATAACGTTGAGGAAGAAAAGAAGAGCTTAGTGGAGAGTGAGGTGAAGAAAACTGCAATGGATGCACAGAAGGAAGTCATTGTTCAAGAATCCAACAAGCGTAAGAAAATCATGGCAGCCTAA 1281 0.452 MEEECNKLIMESINKNYVDMDEYPITTELQNRCVNMIARLFHAELKGDGNAIGAGTVGSSEAIMLAGLAFKKKWQNKQKEDGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLELVKSINVSGHKYGLVYAGIGWVIWRTKDDLPQDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLVRLGQEGYRSIMENCRENAMVVKEELEKSGRFNILSKDKGVPVVAFSLKDRRQYDEYKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAQRLVLDIRNVLHELEKMHLPITVNNVEEEKKSLVESEVKKTAMDAQKEVIVQESNKRKKIMAA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02678 426 PANTHER GLUTAMATE DECARBOXYLASE 1 419 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu3g02678 426 SUPERFAMILY PLP-dependent transferases 2 379 IPR015424 -
Lapu3g02678 426 Gene3D - 294 381 - -
Lapu3g02678 426 Gene3D - 1 293 IPR015421 GO:0003824
Lapu3g02678 426 Pfam Pyridoxal-dependent decarboxylase conserved domain 8 314 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lapu3g02678 426 NCBIfam glutamate decarboxylase 1 377 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu3g02678 426 FunFam Glutamate decarboxylase 1 293 - -
Lapu3g02678 426 FunFam Glutamate decarboxylase 294 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02678 Lapu-Chr3 49427500 49429325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02678 1 414 Calmodulin-binding Proteins AT5G17330 74.463 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02678 K01580 - gmx:100782330 760.37