Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02656 ATGGGTCGTGGAAGGATACCTATGGATCTCATTGAGAAAGAGAAATCTCGAAAGACAACATTTCAGAAGAGAAAAAATGGATTAATGAAGAAAGTGTACGAGTTTTCCACACTTTGTTCAGTTGATGTTGGCGTGATAATCTATGCATCAAATTTTCTCGATGAACCTGAAACATGGCCCGAAGACCAAAGAGAGATAAAACGCGTCATTCAAAAGTATCTGAACACCACCAGTGATAGGCGTCCAAAGGTGTTCGACGTGGAAGAGTATTTCAGTGATAGATTGAAAAGGATTGAAGGTGATATTTCCAAAGTGCAGAAAGGGAAGATTCAGCTTATGTACCCAACATGGGATGACTCTTACAATGCTCTTGAAGAGGAACAATTGAGGATGTTCATTAGCATTCTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAATATGTTCAAGCGAGATTCAAGGGGAAAAGCAATATCAGGATCAGACAATGGAACACTTGTTCCCTACGTGGCCCCAAATTTAGGTAGTCACCTCAATTTGATGCAGAACATGTCTCAAACACAGATTTTCCCTCCTAATGATAACAGCCGAGTACAATTTTACCCATATCATCTAAGTCAAACTTCTCTACCTTCTTTGTTTCAATTTGGTCAAAACAATACCCAATTGATGGGAAAAAATGCAACGGTTGATTGGGGAAATCCAAGTGTGGCTGCTGCAAGTGGTCACAAAAGGGGTATACAACAGGAGGATGGATCAGACAAAAACCAAAACTCCTCACAGTGTTTTTACAATGGAAATATGCAGACAATGCAGCCATGTCATAATAATGTTGCTTTGCAAACTCTTCCTTCTCAATTGCAGTACGATGCAACTTTCCAGACCCTATCAAATCGACCAGGACCACCACGAGGATTTCAACCTAATGGCTATGATGATTCAAATATGCTGCAACCTCATTTTTTAAACTATATGCATAGAAGGAAAATGAATTCCTAG 1002 0.3962 MGRGRIPMDLIEKEKSRKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIYASNFLDEPETWPEDQREIKRVIQKYLNTTSDRRPKVFDVEEYFSDRLKRIEGDISKVQKGKIQLMYPTWDDSYNALEEEQLRMFISILDAKLDACNQRMNMFKRDSRGKAISGSDNGTLVPYVAPNLGSHLNLMQNMSQTQIFPPNDNSRVQFYPYHLSQTSLPSLFQFGQNNTQLMGKNATVDWGNPSVAAASGHKRGIQQEDGSDKNQNSSQCFYNGNMQTMQPCHNNVALQTLPSQLQYDATFQTLSNRPGPPRGFQPNGYDDSNMLQPHFLNYMHRRKMNS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02656 333 MobiDBLite consensus disorder prediction 297 316 - -
Lapu3g02656 333 CDD MADS 2 51 - -
Lapu3g02656 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Lapu3g02656 333 MobiDBLite consensus disorder prediction 240 260 - -
Lapu3g02656 333 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 - -
Lapu3g02656 333 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g02656 333 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g02656 333 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g02656 333 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g02656 333 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Lapu3g02656 333 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lapu3g02656 333 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02656 Lapu-Chr3 49137053 49138236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02656 1 210 Type I MADS-box Gene Family AT5G55690 31.336 2.35e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g02656 SRF-TF 9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02656 - - ccaj:109800518 434.876