Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02647 ATGGCTAAATTGGTAATGCAGAGTAATGATAATGGTCCAATGACCTTCTTATTCCTTGCATCAATATTCTTGCTCTTGGCAGCATCCATTAGTTCCCAAGAAGACAACAAACACGTAGAGTGTAGCAAGTCATTCAACTGTGGACTAATGTCCATCTACTACCCTTTCTGGGGAGGGAACAGACCCAGTTATTGTGCCAGCAACCACCAATTCAAGCTCAATTGTGAGGGTAATCAAAACACCACCATTCAACTTGGCTCACAAAGTTTCCAAGTGCTTCACTTTGATCCAGTTCAATACACCGTCAAAATGGTTCGAACAGGTCTTGTCTATGATAATTGCTCTTCCCTGGCCGTAACCAACAATTCTGTGGATTCAAATCTCTTTAGTTACATGAATGTTAGGAACATCACCATCTACTATGGTTGTCCCTACTCCCTGATTTCAAATAGCACACACTCTTTTCGATGCAAGGAAGATGGCGACAAGGGTGCTTTCTATGGGGACCCTGCAACTAGAAAAGTTCAAGATTGTGAAGGACCCAGGATTGAAGTGCAAGTAGCACAGGAACATGACCCAGATGAGGGAATTCAAGGGCTCAACAAAGCTCTGAGTGAAGGGTTTGAAGTACATCTTATTTCAAAGGCACAAGTTCAACAGTGCTTAGAATGCATTTTAACTAATGGAACATGTGGGGCTAATGATGAGTCTAAGTTTTCATGTTTTTGCCCGAATGGAAGTGAAGGTTTAGATTGCTCTCATCATCATAGCGATAAATGGAACTGGCAAAGGAAGCTCGTTATAGGCGTTGGTGCTGCTGTGGTGAGTGCAATTGCAGTTGGCCTTGGCTTTTACATCTATTATGGTCGTCGAAAGAAGAAGGGTCATCTCCATGAAGTATCATCATCTGGAATATCTAATTCTAAAGGAATCTCATATAGTTCTTCTTTAGAAGACTCAGAGAAGGGATGTAAATACTATGGAGTCCACTTCTTCACCTATGGTGAACTTGAAAAGGCCACAAACTTCTTTGATCCTGACAGGGAACTAGGAGACGGAGGATTTGGAAAAGTGTATTTTGGGAAACTTCAGGATGGACGATTAGTTGCAGTGAAGAGAATGTACGAGAACAGTTTGAAAAGAGTTGAGCAATTCGTGAATGAAGTGGAGATCTTAACTGGTTTACACCACCAAAACCTTGTGACTCTATACGGATGCACTCCTCGTCACAGTAGAGAACTTATGTTGGTGTACGAATACATTCCAAATGGAACCGTTGCTGATCATCTTCATGGTCAAAGAGCAAAGCCTGGCACACTCCCATGGAACATCAGAATGAACATTGCCATAGAGACTGCAAGTGCATTGGTATATCTGCACGCTTCTGAAATCATCCACAGAGACGTCAAAACCACCAACATTCTCCTTGACAACCACTTCAGTGTGAAAGTAGCAGACTTTGGGCTCTCACGTCTCTTGCCAACCCATGCCACACACGTTTCCACTGCCCCACAAGGGACTCCTGGTTATGTGGATCCAGAGTATCATGAGTACTACCAGCTCACTGATAAGAGTGATGTTTATAGCTTTGGGGTGGTGCTGATTGAGCTTATATCATCCATGCATGCGGTTGATATCTCAAGGCGTAGGCATGAGATAAACTTGTCTAACATGGCCATTAAGAAGATCCAAAGTGGTGCGTTGCATGAGATTGTGGACCCCACTCTGGGGTTTGAGTCGGATTTCAAGGTGAGGAAAATGATCAATGCAGTGGCTGAGTTGGCGTTTCAGTGCTTGCAGAGTTCCAAAGATGTGAGGCCCTCTATGGCAGAAGTGTTGGATAGACTGGAGGACATAAGAAGTGATGGAAAGTATAAGAGCAAGCATGAGGTGCTGGATATATCAGAAGATGATGCAGCTTTGCTCAGGAATGAACCACCTCCACCTTCACCTGATTCAAATTTGGTCACCATTTCTACACCACCAAATGATAGTATA 1998 0.4329 MAKLVMQSNDNGPMTFLFLASIFLLLAASISSQEDNKHVECSKSFNCGLMSIYYPFWGGNRPSYCASNHQFKLNCEGNQNTTIQLGSQSFQVLHFDPVQYTVKMVRTGLVYDNCSSLAVTNNSVDSNLFSYMNVRNITIYYGCPYSLISNSTHSFRCKEDGDKGAFYGDPATRKVQDCEGPRIEVQVAQEHDPDEGIQGLNKALSEGFEVHLISKAQVQQCLECILTNGTCGANDESKFSCFCPNGSEGLDCSHHHSDKWNWQRKLVIGVGAAVVSAIAVGLGFYIYYGRRKKKGHLHEVSSSGISNSKGISYSSSLEDSEKGCKYYGVHFFTYGELEKATNFFDPDRELGDGGFGKVYFGKLQDGRLVAVKRMYENSLKRVEQFVNEVEILTGLHHQNLVTLYGCTPRHSRELMLVYEYIPNGTVADHLHGQRAKPGTLPWNIRMNIAIETASALVYLHASEIIHRDVKTTNILLDNHFSVKVADFGLSRLLPTHATHVSTAPQGTPGYVDPEYHEYYQLTDKSDVYSFGVVLIELISSMHAVDISRRRHEINLSNMAIKKIQSGALHEIVDPTLGFESDFKVRKMINAVAELAFQCLQSSKDVRPSMAEVLDRLEDIRSDGKYKSKHEVLDISEDDAALLRNEPPPPSPDSNLVTISTPPNDSI 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02647 666 Gene3D Phosphorylase Kinase; domain 1 315 420 - -
Lapu3g02647 666 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 654 IPR044652 GO:0004672
Lapu3g02647 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Lapu3g02647 666 SMART serkin_6 344 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02647 666 SUPERFAMILY Protein kinase-like (PK-like) 322 617 IPR011009 -
Lapu3g02647 666 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Lapu3g02647 666 ProSitePatterns EGF-like domain signature 1. 241 252 IPR000742 -
Lapu3g02647 666 FunFam Wall-associated receptor kinase-like 20 421 629 - -
Lapu3g02647 666 Pfam Protein kinase domain 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02647 666 Gene3D Transferase(Phosphotransferase) domain 1 421 633 - -
Lapu3g02647 666 ProSiteProfiles Protein kinase domain profile. 344 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02647 666 Pfam Wall-associated receptor kinase C-terminal 175 245 IPR032872 -
Lapu3g02647 666 MobiDBLite consensus disorder prediction 636 666 - -
Lapu3g02647 666 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02647 Lapu-Chr3 49030866 49033967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02647 43 665 Receptor kinase-like Gene Family AT1G25390 43.032 6.37e-147 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lapu3g02647 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02647 - - vra:106766190 1134.4