Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02646 ATGATGACGCCAAACTTGAACTTGGAACCCGAAAATCATTCAGAAGGAAGTAGCCAGGTGGCTTCCAATGCATCCTTGCGTGAAGCATCTCATGATCTTACCAAGGGCAGCACCACCACTTCCTCCTGTCTTACAAAGGATGAAACTGATCCAGGTTCTGTTACTCTTGACTTGACACTCAACTTCAATTCCAGTGATACTGAGTTGAACGGTTCTAGTGATGCTAGCAGTGAAGTGGGAGCTGAAGCTCCTACTTCAGCATCAGCAACTCCCAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGTTCGCAGGCATTAGGGGGTCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCAATGAGAATGGGAATGTTCACTGAGAGGTACACAAGTTTGGCATCCCTACCTCTTCATGGTTCACCTTTCAGGTCTCTTGGTCTTGAAGCTCATTCTGCAATGCACCAAAGACATGTGCCATCCTCACTGAGGACTCCTGATATGAGAGCCGCTGCAAGATTTGAGAGAAACCATTTTGGATCACTGGTTTTCATGGAAGATGATGATGTTGGATTATTTTGGCCTGGAAGTTTCAGACAAGTAGACCAAGGAGGTGGTGTTAATGAAGGACATGTTCAAAGTTCAAATGCAAGTCTAGTGCCAACAGTGCTTCCTCCACCACAAGCTTCTGCATCTCCGGATCTCACATTGAAGCTTTAA 738 0.4553 MMTPNLNLEPENHSEGSSQVASNASLREASHDLTKGSTTTSSCLTKDETDPGSVTLDLTLNFNSSDTELNGSSDASSEVGAEAPTSASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHQRHVPSSLRTPDMRAAARFERNHFGSLVFMEDDDVGLFWPGSFRQVDQGGGVNEGHVQSSNASLVPTVLPPPQASASPDLTLKL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02646 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Lapu3g02646 245 MobiDBLite consensus disorder prediction 213 231 - -
Lapu3g02646 245 Gene3D Classic Zinc Finger 71 140 - -
Lapu3g02646 245 MobiDBLite consensus disorder prediction 210 245 - -
Lapu3g02646 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 167 IPR044246 GO:0009788
Lapu3g02646 245 FunFam Zinc finger protein 2 71 140 - -
Lapu3g02646 245 MobiDBLite consensus disorder prediction 1 50 - -
Lapu3g02646 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Lapu3g02646 245 MobiDBLite consensus disorder prediction 65 87 - -
Lapu3g02646 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02646 Lapu-Chr3 49007584 49012878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02646 88 245 C2H2 Transcription Factor Family AT1G66140 47.312 7.41e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g02646 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02646 - - gmx:100775305 442.965