Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02645 ATGATTGGAAGTAAAGATCGTGTTGCTGAATCGGAGGGTGAGAACTCTAGGAGCAAGCTTTCAAGGCACCATTTTGGGGCAAACAAGGATTACCCAGATGAGAAAGGTGTTGAATTTATGAGAGATTCACTAGTGGGTGGTGGTGGAGGTGTAGACGGGGTTATTCACCCAAAACCCACCGAGGTTGTTGTTGGAAGCTCGGGGTTCCAAGAGTTGACCCTCAGCTATCTTTGTGACAACCCAAAACTGAGTCTTGCTGAGAAAGAGAATCCTGGTAAAGTCTTGCTGAATTCCTTTGAGAGAATGAGTCACAAAGGGAAAGAGGTTGTGGTTTGTGAGAACTCAAATCAGGATGGGAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCTTTGAGGAAGTTGTTGAGAGGGAGAGTAATAGGGAGAAGAAGCAAAAACTGGAGACCCTCAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACAGCTTCAAACGCCTTGCAAAATGGTGATCAACTAGTTAGGACTAAACCTTGCAGGCCATCCACTACTCACACTTCATATTCCAATGACTACACAGCAGCTTCTTTGTCTTACTCCTATTCCCACCCGTTCTCTCACAATCCAAGCTGCTCGCTAACCCGCAATTCAACTGATAATTTTGAGTACTCTGAGAGCAAAGATGACCAAATTTGGAACTGTGGGGAGGGGACCAATGGGTCTGTGCATAGTAGGTTCAAGCCAATAGGAGACGGGGTTGCTTTGTCCAACCATGGTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCATCAGAGTTACCTGCCAGGCCAAGGCTTGAGGCTCACTCAGGGGACTCAAGGGGTAGGAACTCTGAGAATCTGAGAATCTTGGATGGCTTGGATGATGGGAAGGTAAGGAAGCATTCCAGACCAGAGAGAATTATAAGGGAGATTGTTTCAGAGTCTATCACTGTCATGGCATTGACAATTCAGGAGCTTACTGATGACGTCATAGCATCAACTAAGGAATACTTGAAGAATCTCATTGAGAGGCCTGACAAGAAAGAGGAACTGGTAAGCCTCCAAAACCGGCTTGATAGAAGATCTGACCTTACCAAGGAGAGTCTTTCAAAGTGCCATAAAGTACAATTAGAGGTTTTGGTGGCTATCAAGATGGGGCTTGCTAGCTTCCTATCTAGCAAAGTTCACTTGTCTGAGATGGTTGAGATTTTCTTGTATAAGAGATGTAGGAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCTGGAAATAAGGGCTTTTGTAGTGCTTGCATGTGTCCGGTCTGTCTGAACTTTGACTGTGCTAATAATACTTGTAGTTGGATAGGATGCGATGTTTGTTCTCATTGGTGCCATGCTACCTGTGGCATTCTGAGAAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCTCAGAGATGCAGTTTCATTGTATCGGATGTGGACATGCCTCGGAAATGTTTGGTTTTGTTAAAGACGTGTTTGTGTGTTGTGCAAAGGATTGGGGTCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAGGATCTTCAGGGCAAGTGAAGATCGCAAAGGGAAGGAATTGCATCTTAAAACTGATGACGTGCTATTAAAGCTTCAAACTAAAATGATATCTCCTTTGGACGCTTGCAATTACATCGTACAATTTTTCAACTACGCAGACAGCATGTCAGACTTTCCTGCTTCTGCTGGTATTTCTTCAAAGGATTTGGCAGCCTCTCAAACTAAACTTACAAAGGATACTCCATCTCTTTCAAAATCTAACCCTGTATTACCAAAATATGGTTATGACATGGGCTATTCTAGGTCACATCCTGATGCCATGTCAAGTGAACTACTTCAGAAAGACCTCAAAACTTCCATCTTGAGTGAACTGAAAAATGAGGCTGATTTCCATTTGGGGGCTTTATTAAGAAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGTGCAGATGGAAGAAGAGTATGCTGAAAAGCTTTCCAAACTCTGCTTGCACGAGACCGAGGAAACGCAGAGGAAGAAAATGGATGAACTGAAAGTCTTGGAAAATTCGTATTTTGATTACTATAAAATGAAGAAGAGAATGCAAGAAGAGATTGATGGGTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAG 2418 0.4355 MIGSKDRVAESEGENSRSKLSRHHFGANKDYPDEKGVEFMRDSLVGGGGGVDGVIHPKPTEVVVGSSGFQELTLSYLCDNPKLSLAEKENPGKVLLNSFERMSHKGKEVVVCENSNQDGKWVERDFLSLSEPREDSSKRSFEEVVERESNREKKQKLETLNLSLALPDVSLSLTASNALQNGDQLVRTKPCRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSESKDDQIWNCGEGTNGSVHSRFKPIGDGVALSNHGAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRLEAHSGDSRGRNSENLRILDGLDDGKVRKHSRPERIIREIVSESITVMALTIQELTDDVIASTKEYLKNLIERPDKKEELVSLQNRLDRRSDLTKESLSKCHKVQLEVLVAIKMGLASFLSSKVHLSEMVEIFLYKRCRNVTCKHLLPVDDCDCKICSGNKGFCSACMCPVCLNFDCANNTCSWIGCDVCSHWCHATCGILRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELDCVRRIFRASEDRKGKELHLKTDDVLLKLQTKMISPLDACNYIVQFFNYADSMSDFPASAGISSKDLAASQTKLTKDTPSLSKSNPVLPKYGYDMGYSRSHPDAMSSELLQKDLKTSILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTVQMEEEYAEKLSKLCLHETEETQRKKMDELKVLENSYFDYYKMKKRMQEEIDGLLRRMEATKQQWV* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02645 805 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 101 804 IPR004082 -
Lapu3g02645 805 CDD PHD_OBE1_like 472 531 IPR047578 -
Lapu3g02645 805 Pfam Coiled-coil region of Oberon 666 794 IPR032535 -
Lapu3g02645 805 Coils Coil 707 727 - -
Lapu3g02645 805 Coils Coil 755 775 - -
Lapu3g02645 805 Pfam PHD - plant homeodomain finger protein 442 566 IPR032881 -
Lapu3g02645 805 Coils Coil 783 803 - -
Lapu3g02645 805 MobiDBLite consensus disorder prediction 283 320 - -
Lapu3g02645 805 MobiDBLite consensus disorder prediction 1 34 - -
Lapu3g02645 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 433 454 IPR004082 -
Lapu3g02645 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 552 571 IPR004082 -
Lapu3g02645 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 355 377 IPR004082 -
Lapu3g02645 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 499 IPR004082 -
Lapu3g02645 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 740 762 IPR004082 -
Lapu3g02645 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 394 409 IPR004082 -
Lapu3g02645 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 701 721 IPR004082 -
Lapu3g02645 805 MobiDBLite consensus disorder prediction 304 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02645 Lapu-Chr3 48989930 48994558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02645 442 539 PHD Gene Family AT5G57380 28.571 2.32e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02645 - - gmx:100820216 1451.03