Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02620 ATGAAAGAACCCCAAGCAAGGAAATATTTTCACCAGCTTATATCTGCTCTGGATTACTGTCATAGTAAAGGTGTTTTCCATACAGACATAAAGCCGGAGAATTTGTTGGTGGGTGATGATGGAGTGCTTAATTTATCATCAGATTTTGGATTGAGTGCACTCCCCCATCAAGCCTATGTGACAAAACACTACGGCTATGAGGGTCCAAAGGCTGATATTTGGGCATGTGGTGTTACACTTTTCTTTATGGTTGCTGGTTATTTGCCCTTCACCAGTGATGACCAGCGTAATTTATATGAAAAGATTTGTGCGGCTGAGTACACCCCCTTACTTTTTTCTAAAGAATTGAAGAGACTGATTGAGAGAATGCTTGATCTCAATCCTGCCACACGGATCACAATTGATCAGATGTATCAGGATGAGTGA 426 0.4108 MKEPQARKYFHQLISALDYCHSKGVFHTDIKPENLLVGDDGVLNLSSDFGLSALPHQAYVTKHYGYEGPKADIWACGVTLFFMVAGYLPFTSDDQRNLYEKICAAEYTPLLFSKELKRLIERMLDLNPATRITIDQMYQDE* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02620 141 Gene3D Transferase(Phosphotransferase) domain 1 1 141 - -
Lapu3g02620 141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Lapu3g02620 141 SMART serkin_6 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02620 141 SUPERFAMILY Protein kinase-like (PK-like) 2 139 IPR011009 -
Lapu3g02620 141 Pfam Protein kinase domain 2 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02620 141 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 139 - -
Lapu3g02620 141 ProSiteProfiles Protein kinase domain profile. 1 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02620 Lapu-Chr3 48667958 48669283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02620 1 141 CBL-interacting serine-threonine protein kinases AT1G30270 50.625 1.55e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_Cr-1 Lapu3g02620 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02620 - - pvu:PHAVU_002G178400g 203.371