Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02615 ATGGAGGAGGATGAGATTCAAGCACAGGCGTGTAAGTTCCCTAGAGTTGGAAACGGAAGGAATGAGGATATTGGAGAGGTTAGAAGAAGAGGCAGTGATGGAGAGAGCACGAACAGGTTCCACAGCTGGCACCACTCTTCTAGGATCATAAGGGTGTCTCGTGCATCTGGCGGGAAAGACAGGCACAGCAAGGTGATGACTTCAAAAGGTTTGAGAGACAGAAGGGTTAGGCTTTCTGTGACCACGGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGACCAACCCAGCAAAGCTGTGGAGTGGCTTATCAAATCTGCTGCTGATGCCATTTCTGAGCTACCTTCTTTGAACTCTTTCCCTGACACCCCCAGAAGCGATGACAAGAAGGCAAGCGCAGATGCTGATGAGGTACATGATGAAAATGAGAATGGCAATGGGACCTTTCATCAGCAGAACGATAACAACAACAACCATAACCAGAGCCAGAACATGTCTTTGTCCAAGTCTGCTTGTAGCAGCACTTCTGAGACAAGCAAGGGCTCTGGCTTGTCCCTCTCCAGGTCTGACATCCGTGTGAAGGCCAGGGAGAGGGCAAGGGAGAGAACAGCCAAGGAGAAAGAAAAGGAAAAAGAGAAAGAGAACAATGAGTCTCTTCACGATGCTCCTCCTCGTCCTCATCATAACCATCCACACCAAAATCCCATTTCACAAACATCTTCTTTCACTGAGCTTCTCACCGGTGGGATCGGCAATGCGGTTCCCACAACAGCCAGTCCCAAAGGGTGTGATGAACCTAACATGATGTTCAACAAAGCTGGTAGACAGCAGTGGTGTCCATCAGCATCCATGGACTACTTTATGGGGCCTTCCTCTTCTAGAACAACTCCCCATCATCAATATTCTTCTTCTACCGGGTTCTCATTGGCACAAATCCAACTGGGACATACCCTTCCTGAGGCCATGAATAATAATGTCCCAGCCGCATTCAACAACGTGAGTGGTGAAAACCACCACCACTCGTCAGATCCTCAACTGCAGCATCACTTCTCTTTCATTCCGGATCCTCACCTAATGTCAGCTGTGGTTACTTCTTCTTCCGCTTCTCATCAGCCCAGCGGGAACGACTACAATCTCAACTTCACCATGTCTTCGGGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTGCTGCCTCACCTGCAGAGGTTTTCGCCGTCTATAGACGGATCCACCGTACCCTTCTTCATTGGATCTGCTCCACCTGCTTCTGCCATGGAGAACAACAACAACAGCAACCATCACCACCACCAGTTCTCTTCTGTTTTCGATGGCAGCCGCTTGCAACTTTACTATGCTGATGGAGGCCGCCATTCTGACCAGAAGGGGAAACCCAAAAACTGA 1425 0.494 MEEDEIQAQACKFPRVGNGRNEDIGEVRRRGSDGESTNRFHSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAISELPSLNSFPDTPRSDDKKASADADEVHDENENGNGTFHQQNDNNNNHNQSQNMSLSKSACSSTSETSKGSGLSLSRSDIRVKARERARERTAKEKEKEKEKENNESLHDAPPRPHHNHPHQNPISQTSSFTELLTGGIGNAVPTTASPKGCDEPNMMFNKAGRQQWCPSASMDYFMGPSSSRTTPHHQYSSSTGFSLAQIQLGHTLPEAMNNNVPAAFNNVSGENHHHSSDPQLQHHFSFIPDPHLMSAVVTSSSASHQPSGNDYNLNFTMSSGLAGYNRGTLQSNSPSLLPHLQRFSPSIDGSTVPFFIGSAPPASAMENNNNSNHHHHQFSSVFDGSRLQLYYADGGRHSDQKGKPKN* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02615 474 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Lapu3g02615 474 Pfam TCP family transcription factor 57 211 IPR017887 -
Lapu3g02615 474 MobiDBLite consensus disorder prediction 19 40 - -
Lapu3g02615 474 Coils Coil 195 224 - -
Lapu3g02615 474 ProSiteProfiles R domain profile. 191 209 IPR017888 -
Lapu3g02615 474 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 398 IPR005333 GO:0003700
Lapu3g02615 474 MobiDBLite consensus disorder prediction 192 230 - -
Lapu3g02615 474 MobiDBLite consensus disorder prediction 116 240 - -
Lapu3g02615 474 MobiDBLite consensus disorder prediction 147 188 - -
Lapu3g02615 474 MobiDBLite consensus disorder prediction 125 146 - -
Lapu3g02615 474 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02615 Lapu-Chr3 48575255 48586457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02615 35 474 TCP Transcription Factor Family AT4G18390 43.897 2.46e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu3g02615 TCP 9.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02615 - - gmx:100816799 566.614