Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02612 ATGAAACTTTCATCAGCAGGTTTTAGTCCTCCACCACAGGAAGGAGAAAAGCGAGTACTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTGGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAGCAGGGAAGTGGATGGCCATATACCCAACTATCCAAGCTTACCACCGCAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACCGAGACTGATGAAGTATATGCTCAGATGACTTTGCAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACTGCCAGTGACACTAGCACTCATGGGGGATTTTCTGTTCCTCGTAGAGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTAATCGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTCCTCTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCCAATCGTCCTCAACCTGTGATGCCTTCATCAGTTTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACTAATAGTCGTTTCACCATCTTTTATAACCCACGAGCTAGCCCATCAGAATTTGTCATACCTTTGGCAAAGTATGTTAAAGCCGTGTATCATACTCGGGTTTCAGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCAGTGTTCGCCGATACATGGGCACAATAACTGGCATTAGTGACCTGGATTCTGTTCGGTGGCCAAATTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACTGCAGGAGAGAGGCAACCCCGGGTGTCTTTATGGGAAATTGAGCCATTAACAACTTTTCCGATGTATCCATCTCCATTCCCCCTCAGGCTCAAGAGACCATGGCCTCCAGGACTGCCTTCATTCCATGGCTTGAAGGATGATGATTTTGGTATAAATTCTTCACTAATGTGGCTTCGAGATGCAGACAGAGGTCTTCCATCTCTTAATTTTCCGGGAATTGGTGTTAGTCCTTGGATGCAGCAGCGGCTTGATCCCTCAATGGTGAATTATCAAACAGACGTGTACCAAGCTATGGCTGCCGCTGCTCTTCAGGATATGTGGAGTTCAGATCCTTCCAAACAACATCCTACTTCCGTACTTCAATTTCAGCAACCACAGAACTTCCTGAACAGGACTTCTCCCTTAGTGCAGACTCAAATCTTGCAGCAGTCTCAATCTCAGCAGTCTTTCTCAAATAGTCAAGAAATACCACATCCATCTCAGTCTCAGGCTCAGGCTCAAACTCAAACACATTTTCAGCAGCATCTACAGCATCAGCACTCATTCAATAATCAGAATCAGCATCATCTTCTACAGCAGCAACAATTGCAACAACCACAGCAGCAACAACAGCAGCTGCAGCAGCAGCAAGTGGTTGATCATCAGCAGATTTCAAGTGCTGTATCTACAATGTCTCAGTTTGTTTCAGCACCTCAATCTCAATCGCCACCCATGCAAGCTATCTCTTCACTGGGACATCAGCAAAGTTTTTCTGATTCAAATGGAAACCCTGTGACTAATGCTATTGTTTCTCCCCTGCATAATATTTTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACCTCTTGGATTCCTGTTCAACCTTCAACTGCATGGCCGCCCTCCAAGCGAGTTGCAGTGGATCCTCTCCTTTCTTCTGGGGCATCTCAATGTGTCCTGTCTCAAGTGGAGCAGTTAGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGGGAATGTGCTATAGAAGGAAGCACCGATCCACAAAATCATCTTTTGTTTGGAGTAAATATAGAGCCCCCATCGCTGCTAATGCATAATGGGATGTCGAGCCTCAAGGGAGTGAGTAGCAACAGTGGCCCACCAACTATACCTTTTCAATCATCTAATTACCTGAACACCACAGGCACTGATTCTTCAATGAATCCTGGAATGGCACACAATATTGGTGAATCGGGCTTCCTGCAAACCCCAGAAGATGGAGGGCAAGGAAACCCACCAATCAAAACCTTTGTGAAGGTTTACAAGTCGGGGTCCTTTGGAAGATCATTGGATATCACAAAATTCACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCACCAAATGGGCAACAGTGGCCTTGAGCTTCTTAACTCAGTCCCAATTCAGAGGCTCTCTAGTGGCGTGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATAAGCACTGGGATAACAACTGTGGGTTCTTTAAACTACTGA 2739 0.4608 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTSREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGLKDDDFGINSSLMWLRDADRGLPSLNFPGIGVSPWMQQRLDPSMVNYQTDVYQAMAAAALQDMWSSDPSKQHPTSVLQFQQPQNFLNRTSPLVQTQILQQSQSQQSFSNSQEIPHPSQSQAQAQTQTHFQQHLQHQHSFNNQNQHHLLQQQQLQQPQQQQQQLQQQQVVDHQQISSAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHNILGSFPQDETSHLLNLPRTSWIPVQPSTAWPPSKRVAVDPLLSSGASQCVLSQVEQLGQPQSTMAQNAITLPPFPSRECAIEGSTDPQNHLLFGVNIEPPSLLMHNGMSSLKGVSSNSGPPTIPFQSSNYLNTTGTDSSMNPGMAHNIGESGFLQTPEDGGQGNPPIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVHQMGNSGLELLNSVPIQRLSSGVCDDYAGHEDPRSISTGITTVGSLNY* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02612 912 Gene3D - 776 868 - -
Lapu3g02612 912 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 868 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu3g02612 912 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Lapu3g02612 912 SUPERFAMILY CAD & PB1 domains 779 855 - -
Lapu3g02612 912 SMART B3_2 127 229 IPR003340 GO:0003677
Lapu3g02612 912 MobiDBLite consensus disorder prediction 483 523 - -
Lapu3g02612 912 Pfam AUX/IAA family 778 864 IPR033389 -
Lapu3g02612 912 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu3g02612 912 Gene3D - 291 363 - -
Lapu3g02612 912 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lapu3g02612 912 Gene3D - 125 228 IPR015300 -
Lapu3g02612 912 FunFam Auxin response factor 125 229 - -
Lapu3g02612 912 FunFam Auxin response factor 291 363 - -
Lapu3g02612 912 FunFam Auxin response factor 775 868 - -
Lapu3g02612 912 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lapu3g02612 912 CDD B3_DNA 126 227 IPR003340 GO:0003677
Lapu3g02612 912 ProSiteProfiles PB1 domain profile. 779 863 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02612 Lapu-Chr3 48514385 48523690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02612 1 912 B3 DNA Binding Superfamily AT1G30330 68.842 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu3g02612 AUX_IAA 4.8e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02612 - - gmx:100777789 1582.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02612 3 48514385 48523690 Lapu3g02612 3 48514385 48523690 ECH