Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02609 ATGGAAGTGATGGCGTACCAGTTTTCCCGGTTACCTTACTCGGATTCCCTCAAACTGCTCGAGGCAGATATACAACAAGCAAATGCTTTGGCTGCTGAAATTCCCAGGGCCAAGGGTGGGACTCTTCTCCAAATGAAATTGGCTTACAACCATTTGGCTCCTCTCTTTCTGTTGTTGCTACAGTGGATGGATTTTTCTTGTACATGCTTTCTTCACAGATATCTTGACCTCTTCCACATAGTTGTATACAAGGTACACAATGATGGTAGATCAAATATGACTTCTCATGGAAGGAAAGCAACCATCAGGGACTTTTATGCTATTATTCTGCCGTCTCTTCAAAGACTTCATGGTAGCATGGAGAAGTTGGATATTTGTAACAAAGGACATTCTAGCATAGATGGCTCAAGCTATGGCAAGAAAATGATTGAAGGAGATGCGAAACCAATCAATGTCGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAACCTTGCACCAAGATGGTTTTACCTAATTGTTGTCATGCCATGTGTATAAAATGCTACCACAAGTGGAACAAACTGTCAGAATCTTGTCCTTTTTGCCGTGGCAGCATAAGGAGAGTTAATTCTGAGGATCTATGGGTACTCACTTGTAATGCAGATGTTGTTGATGCTGAAACAGTTTCCAAAGAGGACTTATTACGTTTAAACCTTTACATCCACAACCTACCTAAAGATCACCCGGATGATCTTTTCCTAATGTATTATGAGTATCTGATTTGA 771 0.406 MEVMAYQFSRLPYSDSLKLLEADIQQANALAAEIPRAKGGTLLQMKLAYNHLAPLFLLLLQWMDFSCTCFLHRYLDLFHIVVYKVHNDGRSNMTSHGRKATIRDFYAIILPSLQRLHGSMEKLDICNKGHSSIDGSSYGKKMIEGDAKPINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYHKWNKLSESCPFCRGSIRRVNSEDLWVLTCNADVVDAETVSKEDLLRLNLYIHNLPKDHPDDLFLMYYEYLI* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02609 256 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Lapu3g02609 256 Pfam Zinc finger, C3HC4 type (RING finger) 157 204 - -
Lapu3g02609 256 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Lapu3g02609 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 209 IPR013083 -
Lapu3g02609 256 SUPERFAMILY RING/U-box 151 203 - -
Lapu3g02609 256 SMART ring_2 160 197 IPR001841 -
Lapu3g02609 256 PANTHER RING FINGER PROTEIN 41, 151 12 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02609 Lapu-Chr3 48456237 48458563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02609 153 207 C3H Transcription Factor Family AT5G47610 43.548 7.41e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02609 - - gmx:100790422 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00467 2 3915644 3924370 Lapu3g02609 3 48456237 48458563 PCT