Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02607 ATGACTCTTCTCTCCCACAACATGGACAATGGTTGCTTCTCTTCGCCACGCCACGATGCTTTTCCAGCTGGTCTGCGAGTTCTCGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGCTTGTATGAAGTGACTACATGTTGTTTAGCCATTGAGGCTCTGAAAAAACTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTGCTAGAGCAAGTTGGACTTGAAATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACCAGCAGGGTGATGAAAGGTGTCCAACATGGTGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAACACGTCTTTAGAAAAAGGATGCATGAAGCAAGAGATTTTGAAAGCCATGAGGGTTTTGAGGCCCTTCACTTGATGATGAATGGATCAGATCAGTCCGATGATGGTAACCTGTTTTCTGTAGAAGAAATTACCTCAATAAAGAAAAGAAAAGATGCAGATAACAAACACGATGATAAAGAATTTGGAGATCATTCTCCCACAAAAAAAGCTAGGGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTCAAAGCAGTGAATCAAATTGGATTTGACAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAGTGTTCCCTGGTTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCTTCAAGTGGAATAAAGCATTCGGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTTTTCTAAACACTGCAAACAACAAGCAACAAAATGATGTTGCCATTGACAGTTTCAGTCATTCAGATGGAAGTGTACTACTTCAGATGGATGTTCCAAGTCATGAAGGTGATCTCAAGGGAATCGCGTCAGAGTCTACAACCGAAAAAAGAAGAGCTTCACCAAAAAGTTCACAGATGAGCCTCAATCAACCTTTTTCATCTGTAGAGTCATCAGAAGCAAGCCATGCAGTATTTGATTGCACTATACCAAAACAGTACTCTTGGAGTGAATTTCCACAAGGACCACTCAAAGAAGAACAGAAGACAATTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACATGGTACACAGCATCACATTCAGGTTGATCAATCACAATCGATTGCTTCGATTAATTCTAATCCTTCTATAACAGAAGAAGAGGTTGCTCCCAGCTTAGACACCAAACCTTTGTATGCTGGTTACAAGACTGATTATGTGAGTCCTGTGAGCTCAATGGGATCTGAAGTTGACACCTTTCCTAATCAATCCAAAAGCCTCATCGTGAATGATCAATCTTCAGAGCCCATATTCACCTCAAATTTGGGCTTGAAAACTCAGGGATTTAATGTAGATTGCATTTCTGATCAGGATTTTTACCAAAGGAATCTATTATTGGGTGGTGAGGCAGCTTCTGCAGCTTTGGAGGAAGACCTGAATTTCTTTTTGCTGCAAACTGAGTGGTACAACATGAATTTTGGGCAGCAGAGTATAGATGTGTCAGAATGTTATGATTCAAGGCTTGTTGCTGAGGGCCCTAGCTACTTTTATGATTCTGCAGATTATTCATCGGTAGATCAAAGTCTATTCATAGCATGA 1740 0.4029 MTLLSHNMDNGCFSSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLAIEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFEALHLMMNGSDQSDDGNLFSVEEITSIKKRKDADNKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDPGSFSFLNTANNKQQNDVAIDSFSHSDGSVLLQMDVPSHEGDLKGIASESTTEKRRASPKSSQMSLNQPFSSVESSEASHAVFDCTIPKQYSWSEFPQGPLKEEQKTIVQLEDSFSQLPLHGTQHHIQVDQSQSIASINSNPSITEEEVAPSLDTKPLYAGYKTDYVSPVSSMGSEVDTFPNQSKSLIVNDQSSEPIFTSNLGLKTQGFNVDCISDQDFYQRNLLLGGEAASAALEEDLNFFLLQTEWYNMNFGQQSIDVSECYDSRLVAEGPSYFYDSADYSSVDQSLFIA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02607 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 312 IPR045279 GO:0009736
Lapu3g02607 579 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Lapu3g02607 579 MobiDBLite consensus disorder prediction 325 359 - -
Lapu3g02607 579 CDD REC_typeB_ARR-like 27 141 - -
Lapu3g02607 579 Gene3D - 25 194 - -
Lapu3g02607 579 Gene3D - 204 266 - -
Lapu3g02607 579 Pfam Response regulator receiver domain 27 136 IPR001789 GO:0000160
Lapu3g02607 579 SMART REC_2 25 137 IPR001789 GO:0000160
Lapu3g02607 579 SUPERFAMILY CheY-like 24 152 IPR011006 -
Lapu3g02607 579 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Lapu3g02607 579 MobiDBLite consensus disorder prediction 269 296 - -
Lapu3g02607 579 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Lapu3g02607 579 FunFam Two-component response regulator 203 266 - -
Lapu3g02607 579 MobiDBLite consensus disorder prediction 344 359 - -
Lapu3g02607 579 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02607 Lapu-Chr3 48424011 48428349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02607 19 273 Response Regulator Gene Family AT2G25180 54.104 2.55e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu3g02607 Response_reg 6.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02607 K14491 - gmx:100778324 1003.43