Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02602 ATGCTCGTTTTCGATGCAGTGTTGGGAACGCTCAATGTGGCATTCCTTTATGCCATTTTGATATGGGTTTTGGTGGATAGCTTGAGACAAAGCACGCGTAGCAGTGTTCCTGATGGGTATTTCAAACGAAGACCAATGGTTTTCGCTGTGTTCACTGTTCTATCCTGTGCTGTTATTTCTGTTATGAACATGGCTCTTGCTTTTCACCAATACTGCTCTACGAGAGTCATAGGATTTAACTCTGTTTCTCTGGCTCTCACTTGGGTTTTGGCCACTGTGGCTTCGTTTTATTCAGTGAGGACCAGAGTGAGGGAAAATAAAAGGTTCCCCCTTGTGCTCGTACTATGGTGGATATTTTCTTCTCTTGTGGATGCACTCTCTCTGTGTGTAAGGCTGGTGAAAGATTTCGAAGCGTTTGACTTGTGGTTTTTCTTGTCAGAGGATAACTTAGTTGCTTCATTTTCCTTGCCTTTCTTGGTGCTTCTTTGTTTCAATGTGTGTAGAAGGGAGCAGAGTGATATGGAGGAGGGGTTGCTTCAGATTGAGGAGGAGTGTTCCATGGAGGAACACGATGGAGAGGCCTTCACTAATGCGAGTGTGTGGAACAAGCTTATATTCCGTTGGTTGAACCCCATTTTTAGAACGGGTCGGGTTAAAAAACTTGAACTTTCTCATATTCCTCCCGTTCCTTGTTCCGAATCTGCGGAAAATGCTTCTTCCATGTTTGAAGGGTCACTTCGAAAACAGAAACTGGGAGAGGGTTGGTTGACGAAAGCTATAGCCGATTCTATATGGAAGTCTTTGGCCTTAAATGCAGTTTTAGCTGGTGTTAACACAGGTGCCTCTTATATAGGTCCCTTGTTGATCACAAATTTTGTTAATTTTTTATTGGGGAACAATGGTGATTCAAGCGTCCAATACGGATTGGTTCTTGCATTTGTTTTCTTCCTCGCTAAGACCGTGGAGTCACTGAGTCAACGACAATGGTACTTCGGCGCTCAACGAATTGGAATCCGGGTGCGTGCAGCTCTTATGTCTCTAATTTATAGAAAGTCCCTAATGATGAAGTCTGCTGGACCAACACAAGGTAAAATCATCAATCTGATTAATGTTGATGTTGAAAGAATTGGGGACTTCTGCTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTCATTTTGGCCTTGGTCATCTTATACATAAATCTGGGTTATATCCCTTCTTTTGCTGCATTTGGTGTCACCATGTTGGTCATGGTGTGTAACACACCTTTGGCCAATAGGCAAGAAAGTTTGCACTCCAAGATCATGGAAGCTAAGGATTCAAGAATCAAAATGACATCAGAGACCATGAAGAACATAAGAATTTTAAAATTGCATTCATGGGAGACCTCATTCTTGCAGAAACTCCTCCAACTTAGGGAAACTGAGAGGGGGTGGCTGCAGAAATACCTCTATACGTGCTCAGCAGTAGCAACACTATTCTGGACATCTCCAACTTTAGTTTCTGTTGTCACCTTTGGTGCTTGTATACTGGTGAAAACAGAACTAACGGCGGCTACAGTACTCTCAGCGTTAGCAACTTTTCGTATTTTGCAAGAACCAATCTATAACTTACCTGAGCTTATCTCCATGATCATTCAAACAAAAGTCTCCGTCGATCGAGTCCAGGAGTTCATCAAGGAAGAGGATCAAAACCAATTCAGAAATAGGCACCCTCCGAAAAATTCATCAGTTGCTATCGAAATAAAGCCAGGGGAATATGCATGGGAAATAAACGATCAAACCCACAAGAAACCAACCATTCAAATTACAAGAAAGTTAGTGATAAAGAAAGGTCAGAAGGTAGCAGTTTGTGGGTCAGTGGGGTCTGGCAAATCAAGCTTGCTCTGCTGTATTCTTGGGGAGATTCCATTAGTATCTGGGGCAGTAACCAAAGTTTATGGGACTAGAAGTTATGTACCCCAAAGTCCTTGGATTCAGTCTGGAACCGTAAGAGAGAATATATTGTTTGGCAAGGAAATGGACAAGGAGTTTTATGAAGATGTTTTGGATGGCTGTGCTTTGCAGCAGGACATCAACATGTGGGGTGATGGAGATTTGAACCTGGTGGAGGAGAGGGGCATAAACTTGAGTGGTGGGCAGAAACAGCGGGTTCAATTGGCAAGGGCTGTTTATAATGATTCAGATATTTATTTCCTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGGAACTCATTTGTTTAAGAAATGTCTCATGAAACTTTTATATGATAAAACGGTTGTTTATGCTACCCATCAACTGGAATTCTTGGAATCTGCAGACCTCATTTTGGTGATGAAAGATGGAAAAATAGTGGAGTCAGGAAGGTATAAAGATCTTATATCATGTCCCAACTCTGAACTTGTTCAACAAATGGCTGCTCACCAAAAAACAGTGCACCAAATAAACCCAAGCCAAGAAGATGATTTTGCTAGCAACAGACCCTGCCCAAAAAATACAACTGAAGCTGCTCGAGAAAATATTCAAGAGATGATGGAATATTGGAAGAGAAACAAAGAAGAGGAAACAGAGACCGGTCGAGTGAAGTGGAGTGTTTACTCAACTTTTGTCACATCTGCTTATAAAGGAGCACTCGTTCCGGTTATTCTTCTCTGCCAGATCATCTTTCAAGTAATGCAAATTGGAAGCAATTATTGGATGTCTTGGGCAACGGAGCAGAGGGACAGGGTCAACAACAAGCAGCTAATGAAAACATTTGTTCTTCTATCTTCTGGGGGCACCATCTTCATACTGGGAAGGACTGTTTTAATGTCAGCTGTTGCTGTGGAAACTGCTCAACGCCTTTTTCACGGAATGATCACATCAGTTTTCCGGGCACCTGTTTCATTTTTTGACACCACACCTTCAAGCCGAATTCTGAGTAGGTCATCAACAGATCAAAGTACAGTAGACACAGACATACCATACAGATTAGCTGGACTAGTATTTGCTCTGATACAGTTATTGAGTATCATTGTGCTAATGTCCCAAGTTGCCTGGCAAGTCATTCTCCTCTTTTTTGTGGTGCTTGCTATTTCCATCTGGTATCAGTCTTATTACATCACGACAGCCAGGGAACTAGCCCGGATGGTTGGGATTCGAAAGGCTCCAATCTTGCATCACTTCTCAGAATCAATTGCTGGGGCTGCCACAATCCGCTGTTTCAATCAAGAGCAACTATTCTTGACCAAGGTTAACGTTCTAATCGACGACTATTCTCGGGTAGCCTTTTACAATTTCGGCACCATGGAATGGTTGTCTGTAAGAATCAATTTCCTCTTCAATTTGGTCTTTTATTTTGTTCTCGTCATCTTGGTCACTCTTCCAAGGTCTACTATTGATCCAAGCTTGGCGGGTCTGGTAGCCACTTATGGTTTGAACTTGAATGTCCTCCAGGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATTTCAGTTGAGAGAATATTGCAGTTCTCTAGCATACCAAGTGAAGCACCCTTAATTATTAAAGATTGCAGGCCTGAACAAGATTGGCCAAAGGAAGGAAATGTTGAACTACATAACCTTCATATAAGGTATGACCCTGCGGCTCCTATGGTACTCAAAGGCATCACTTGTGTCTTCCCAGGACAGAAGAAAATTGGTATAGTAGGCAGGACAGGGAGTGGAAAATCTACTCTTTTGCAAGCCCTCTTTCGAGTGGTGGAGCCTTTGGAAGGAAGTATACGTATTGATGGTGTGGATATTTCCAAGATTGGTCTGAAAGATTTAAGATCTAAGCTTGGTATAATTCCTCAGGATCCAACCTTGTTTCTAGGTACTGTAAGGACTAACTTGGATCCTCTAGAACAACACGCAGATCAAGAACTTTGGGAGGTTCTCAGCAAGTGCCATCTAGCTGAAATAGTAAGGCGGGATCCAAGACTTCTTGATGCACCAGTGGCCGAGAATGGAGAAAATTGGAGTGTTGGACAAAGGCAGCTTGTTTGCCTTGCTAGGCTACTACTGAAGAAAAGAAGAATTTTGGTCCTAGATGAAGCTACGGCATCCATTGACACTGCAACTGACAATTTAATTCAGAAGACAATTAGGGAAGAAACAAGTGGATGCACAGTCATTACAGTAGCTCATAGAATTCCGACAGTTATTGATAATGATTTAGTTTTGGTCCTTGATGAAGGGACAATTGCAGAATATGATGACCCTGCTAAATTGCTGCAGAACAGTTCTTCTTCGTTCTCAAAGTTAGTTTCAGAATTTTTGCGGAGATCATCCCAAAGTAACTTCCAAAAAAGATAA 4341 0.4209 MLVFDAVLGTLNVAFLYAILIWVLVDSLRQSTRSSVPDGYFKRRPMVFAVFTVLSCAVISVMNMALAFHQYCSTRVIGFNSVSLALTWVLATVASFYSVRTRVRENKRFPLVLVLWWIFSSLVDALSLCVRLVKDFEAFDLWFFLSEDNLVASFSLPFLVLLCFNVCRREQSDMEEGLLQIEEECSMEEHDGEAFTNASVWNKLIFRWLNPIFRTGRVKKLELSHIPPVPCSESAENASSMFEGSLRKQKLGEGWLTKAIADSIWKSLALNAVLAGVNTGASYIGPLLITNFVNFLLGNNGDSSVQYGLVLAFVFFLAKTVESLSQRQWYFGAQRIGIRVRAALMSLIYRKSLMMKSAGPTQGKIINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGYIPSFAAFGVTMLVMVCNTPLANRQESLHSKIMEAKDSRIKMTSETMKNIRILKLHSWETSFLQKLLQLRETERGWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMIIQTKVSVDRVQEFIKEEDQNQFRNRHPPKNSSVAIEIKPGEYAWEINDQTHKKPTIQITRKLVIKKGQKVAVCGSVGSGKSSLLCCILGEIPLVSGAVTKVYGTRSYVPQSPWIQSGTVRENILFGKEMDKEFYEDVLDGCALQQDINMWGDGDLNLVEERGINLSGGQKQRVQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYATHQLEFLESADLILVMKDGKIVESGRYKDLISCPNSELVQQMAAHQKTVHQINPSQEDDFASNRPCPKNTTEAARENIQEMMEYWKRNKEEETETGRVKWSVYSTFVTSAYKGALVPVILLCQIIFQVMQIGSNYWMSWATEQRDRVNNKQLMKTFVLLSSGGTIFILGRTVLMSAVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQVAWQVILLFFVVLAISIWYQSYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEQLFLTKVNVLIDDYSRVAFYNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIKDCRPEQDWPKEGNVELHNLHIRYDPAAPMVLKGITCVFPGQKKIGIVGRTGSGKSTLLQALFRVVEPLEGSIRIDGVDISKIGLKDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADQELWEVLSKCHLAEIVRRDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDEGTIAEYDDPAKLLQNSSSSFSKLVSEFLRRSSQSNFQKR* 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02602 1446 Pfam ABC transporter 609 739 IPR003439 GO:0005524
Lapu3g02602 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 800 IPR027417 -
Lapu3g02602 1446 Pfam ABC transporter 1216 1363 IPR003439 GO:0005524
Lapu3g02602 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 269 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02602 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1198 1432 IPR003439 GO:0005524
Lapu3g02602 1446 FunFam ABC transporter C family member 3 1181 1433 - -
Lapu3g02602 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1192 1424 IPR027417 -
Lapu3g02602 1446 SUPERFAMILY ABC transporter transmembrane region 263 565 IPR036640 GO:0005524|GO:0016020
Lapu3g02602 1446 CDD ABC_6TM_ABCC_D1 270 557 IPR044746 GO:0140359
Lapu3g02602 1446 CDD ABCC_MRP_domain2 1196 1416 - -
Lapu3g02602 1446 ProSitePatterns ABC transporters family signature. 712 726 IPR017871 GO:0005524|GO:0016887
Lapu3g02602 1446 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 196 1436 - -
Lapu3g02602 1446 SUPERFAMILY ABC transporter transmembrane region 883 1180 IPR036640 GO:0005524|GO:0016020
Lapu3g02602 1446 CDD ABCC_MRP_domain1 582 787 - -
Lapu3g02602 1446 Gene3D - 603 833 IPR027417 -
Lapu3g02602 1446 FunFam ABC transporter C family member 5 847 1179 - -
Lapu3g02602 1446 FunFam Multidrug resistance-associated protein 4 567 827 - -
Lapu3g02602 1446 CDD ABC_6TM_ABCC_D2 883 1173 IPR044726 GO:0140359
Lapu3g02602 1446 SMART AAA_5 613 795 IPR003593 GO:0016887
Lapu3g02602 1446 SMART AAA_5 1224 1415 IPR003593 GO:0016887
Lapu3g02602 1446 Gene3D ABC transporter type 1, transmembrane domain 847 1179 IPR036640 GO:0005524|GO:0016020
Lapu3g02602 1446 Gene3D ABC transporter type 1, transmembrane domain 255 567 IPR036640 GO:0005524|GO:0016020
Lapu3g02602 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 885 1161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02602 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 584 810 IPR003439 GO:0005524
Lapu3g02602 1446 Gene3D - 1181 1434 IPR027417 -
Lapu3g02602 1446 Pfam ABC transporter transmembrane region 886 1125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02602 1446 Pfam ABC transporter transmembrane region 270 536 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02602 1446 FunFam ABC transporter C family member 10 253 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02602 Lapu-Chr3 48360836 48367357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02602 600 840 Calmodulin-binding Proteins AT2G36910 27.237 2.46e-20 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02602 - - gmx:100809063 2478.74