Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02587 ATGGATGTTGCTGAGGTTCAAGAAAATCTATTTGCTGCAACTGATGCTAAGTTACATGGACAAATGTGCAAAACTCTTTCTATAATATATTGCAAAGTATTGTCTGTTTTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTTAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCTATAACTGCAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATCTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGAAATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAGTTTGTGACAATAGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGCAATGATTTGATTGCATTGCTCCAACAGGGGAGAAAGTTTAACGATTCTAGTGACAGCAATGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGATCGGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTCTTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTTTGGGATCTATTGAGGATAGTGTTCCTGTTAATCATTGTCAAGCCTTTGACAGACAGCTTTCGAAATTCAGTTGCTTTAGTTTCAAACCAAATAGTTGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTGAGGTGCCCCATATCTCTGCAACTTATGTATGACCCTGTCATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGTATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCGACAGAAACTTTTACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCCGAATCTCTTGACCTTAACTACTGGCAGTTGTTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAGATAGTGTCAGGTCTTGCAAGTTGAAGGGTGTCGAAGTGGCTCCTTTGGAAGAGAGTGGTATCTCGGAGGAATCTGTGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGACACGGAGCAGTATTTTAGCTTTCTGAAAGTTTTGACTGAGGGGAATAATTGGACGAGGCAATGTGAAGTGGTAGAACAGTTAAGGTTGCTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGTGCTAATGGGTTTGTTGAAGCACTTCTGCACTTTTTGCAATCAGCTGTGCATGAAGGCAGTTTGATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGTGTATTATCATTGTTGGAAGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACGGCTCTTTATTTGAATCTTTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCACGAGTCAGGCTATCCAGTTCCTAATCCAGCTTCTACAATCTGACTCTGATGTTCAATGCAAGCAAGATGCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCAATATCTCCTTTCATCTGGCATCATTAGTGGTTTACGGTTCCTTCTTGAAGGCGACAGTGATAGTATGTGGACAGAAAGATGCATAGCTGTTTTGATAAATTTAGCTACTTCTAAAGTAGGAAGGGAGGAAATTGTATCAACTCCCGGACTCATTAGTGCATTGGCTTCTATACTGGACACCGGTGAGCTCTTGGAACAGGAGCAAGCTGTCACTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGACGAGACCATTCACCAGTTAAGACACATCAGTGTCCACCTGAAACTAGTGATTTGTCTATGCCGCCAGCAGAAATGAAACCGCTGTGCAAGTCAATCTCAAGAAGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTGA 2295 0.4157 MDVAEVQENLFAATDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPQSIGCQVQEIVNEFVTIEFALDPSEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAATRLGITSSRAALAERRALKKLLERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVLGSIEDSVPVNHCQAFDRQLSKFSCFSFKPNSCRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTRQKLLHLCLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDLNYWQLLLSESESTNSKSVDSVRSCKLKGVEVAPLEESGISEESVENGTESVSAQEEDTEQYFSFLKVLTEGNNWTRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLHFLQSAVHEGSLMAVESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGTSQAIQFLIQLLQSDSDVQCKQDALHALYNLSTVPSNIQYLLSSGIISGLRFLLEGDSDSMWTERCIAVLINLATSKVGREEIVSTPGLISALASILDTGELLEQEQAVTCLLILCNRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETSDLSMPPAEMKPLCKSISRRKSGRAFSFFWKSKSYSVYQC* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02587 764 Gene3D - 531 710 IPR011989 -
Lapu3g02587 764 PANTHER U BOX DOMAIN-CONTAINING 21 709 - -
Lapu3g02587 764 Gene3D - 414 530 IPR011989 -
Lapu3g02587 764 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Lapu3g02587 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Lapu3g02587 764 Coils Coil 175 195 - -
Lapu3g02587 764 Coils Coil 87 107 - -
Lapu3g02587 764 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Lapu3g02587 764 SUPERFAMILY ARM repeat 429 705 IPR016024 -
Lapu3g02587 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 594 IPR000225 GO:0005515
Lapu3g02587 764 SUPERFAMILY RING/U-box 280 355 - -
Lapu3g02587 764 SMART arm_5 540 581 IPR000225 GO:0005515
Lapu3g02587 764 SMART arm_5 455 499 IPR000225 GO:0005515
Lapu3g02587 764 CDD RING-Ubox_PUB 281 333 IPR045210 -
Lapu3g02587 764 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Lapu3g02587 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Lapu3g02587 764 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02587 Lapu-Chr3 48208661 48213854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02587 1 763 U-box Gene Family AT1G24330 65.553 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02587 - - gmx:100794099 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02587 3 48208661 48213854 Lapu3g02587 3 48208661 48213854 ECH
Lapu6g00089 6 683174 688572 Lapu3g02587 3 48208661 48213854 PCT