Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02564 ATGACACCTGGTTACGAGTACGATATTAATGATCTGCATCAAGAAGCTCAAGCCAGATGGCTGAAGCCTGCCGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGTTGACCCAAGAGCCCCCGCAACAGCCAACCAGCGGATCCTTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGGAGAGACGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACACGGAGAGCAGAACCCTAGTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGAGTATGAGCATATTGTTCTAGTGCATTACAGAAACACAAGTGAGGGAAGACTCAGTTCTGTAGCCGGTGCACAATTATCGCCAAGTTCCTCTTCTGCATTTAGTCAGAGTCCTAGTCCATATTCTAATCAGAATCCAGGGTCATCCATACTTGCTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGATCTACAGAAGTTACCTCTGATATATTCATTCTGAACAATAAAATGGATCACATGAATGGAACCGATGCAGAATCAGGAACTTCATCCGAGCTTGAGGTTACTCAAGCTTTGCGCCGACTGGAGGTACAATTGAGTTTGAATGAGGACAGCTTTGAAGATATTGCTCCCTTCTTTAATAAGCACGAAACTGCCCTCGATTTAAACCCTCAGCACAATCAAAGGGTGATCAGCAATCAAGAGCAATCTGCAGCTTTCTCTGGACCTAATGATCAAGGACTATTTTATGATGAATATAATGGAACACAAGGTAATGGTGGTGAATCTTATCATGAATTAATAGACCATGGTTACCCTGATGAAAATGAAAAGGCTTTACGGACTGGGGTGCTGGAATCAGGCAAGTCCTCAACTGCTGTGAAGTTACCACTGAAAAATGTATACATGGCAGCTGAAAATGAAAATTCAGTATCTTGTTCGAGAAGGGTACTGGGACCAGTTTCCAACCAGGAAGACAGTCACTGGCTCAACTTCGACAGTAATAATTCTCAAAGCTCTGTTTTCTCACCACCTCAAGGGGTTGATGAAGTCAAATTTCCTGCATATTCTTCTATGGTGGAAACACGAGTTATTAATTTTGACTACTATGAAACATTGTTTGACCAAAGCCCAATTGTAGCACCTCTAGGTGCAGATTCAAGCTTGACTGTTGCACAAAAACAGAACTTTACTATTAAGACATTCTCCCCAGAATGGGGTTATGCCACTGAGACCACTAAGGTCATCATTGTTGGGTGTTTTCTCTGTCATCCGTCAGAATCTACGTGGGCATGCATGTTTGGTGATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTGTGAAGCTCCACCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACAGGGAGTCCTGCAGTGAGGTCAGAGAGTTTGAATATCGTGATAAGACCTATAGTTGCACCCAATGTACTCAATTTAAAACAGAAACCACTAGAAGTCCTGAAGAGCTGTTATTACTTGTGAGATTAGGGCAGATGCTTCTTTCTACATCAACAATAAATAATGACAACATAGAATCAGTAATTCCTCTCGTAAAACAGAAAGCTGATGATGACTCATGGAGCCATATTATAGAGGCCCTTCTAGTTGGCAGTGGAACCTCGACTAGTACCATAGATTGGCTTCTTGAAGAGTTTCTAAAGGATAAGCTTCAACAGTGGCTTTTTTACAGATCTCAGGAAAGAGATAAAGAGACAGGATGCTCTTTGTCCAAGAAAGAGCAAGGCATTATTCACATGATTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGCTGTGGAGTGAATATAAATTTCCGTGACATCAGTGGGTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGGAAAAAATGGTTGCTTCACTTGTAGCTTCTGGAGCATTTGCTGGAGCAGTGACAGATCCAACTGCACAAGACCCAATCGGTAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGACTAGCAGGGTATCTTTCAGAGGTAGCTGTAACAAGCCACCTGTCATCACTTAAACTGCAAGAGAGTGAATTATCTAAAAGTTCTGCCGAGCTTCAGGCAGATATGACTGTCACCTGTGTCTCCAAGGAAAATCTTGCTGCCAATGAGAATCAGGCGTCACTCAAAGATACCTTGGCTGCTGTCAGAAATGTAACTCAGGCAGCTGCGCGTATACAATCTGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAGCTGCTGGTATAGATAGATATGGTACGAGTATTGGTGGCATTGGTAGCATTCCAGAAATTTCTGCTATGTCAAAACTTGCCTTTCGAAACTCTCGTGAACATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTAGCATTGCGACAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCCTGGACAAGGTTGTGCTACGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACGTTAATGAAGGTGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAAAGGCTGTTTCACGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTGAGCAATATCATCGCATGCTGGAGAAATATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGACGAAGCATCATCAACAACTTCTGTGGGGAATGCCTTATTTATGGAAGATGAATTTTATCCATTGCCCTGGGACCAACGCTAG 2973 0.4326 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPSFQRRSYWMLDPEYEHIVLVHYRNTSEGRLSSVAGAQLSPSSSSAFSQSPSPYSNQNPGSSILADSYEPNQSFSSPGSTEVTSDIFILNNKMDHMNGTDAESGTSSELEVTQALRRLEVQLSLNEDSFEDIAPFFNKHETALDLNPQHNQRVISNQEQSAAFSGPNDQGLFYDEYNGTQGNGGESYHELIDHGYPDENEKALRTGVLESGKSSTAVKLPLKNVYMAAENENSVSCSRRVLGPVSNQEDSHWLNFDSNNSQSSVFSPPQGVDEVKFPAYSSMVETRVINFDYYETLFDQSPIVAPLGADSSLTVAQKQNFTIKTFSPEWGYATETTKVIIVGCFLCHPSESTWACMFGDVEVPVQIIHDGVICCEAPPHLPGKVTLCITSGNRESCSEVREFEYRDKTYSCTQCTQFKTETTRSPEELLLLVRLGQMLLSTSTINNDNIESVIPLVKQKADDDSWSHIIEALLVGSGTSTSTIDWLLEEFLKDKLQQWLFYRSQERDKETGCSLSKKEQGIIHMIAGLGFEWALNPILSCGVNINFRDISGWTALHWAARFGREKMVASLVASGAFAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLKLQESELSKSSAELQADMTVTCVSKENLAANENQASLKDTLAAVRNVTQAAARIQSAFRSHSFRKRRAREAAAGIDRYGTSIGGIGSIPEISAMSKLAFRNSREHNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDVNEGEDEDILKVFRKQKVDVEIEKAVSRVLSMVDSPDAREQYHRMLEKYRQAKAELAGTSDEASSTTSVGNALFMEDEFYPLPWDQR* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02564 990 SMART CG_1_2 12 130 IPR005559 GO:0003677
Lapu3g02564 990 FunFam Calmodulin-binding transcription activator 4 isoform A 534 718 - -
Lapu3g02564 990 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 958 - -
Lapu3g02564 990 Pfam IQ calmodulin-binding motif 854 873 IPR000048 GO:0005515
Lapu3g02564 990 Pfam IQ calmodulin-binding motif 831 849 IPR000048 GO:0005515
Lapu3g02564 990 Gene3D - 828 877 - -
Lapu3g02564 990 Pfam IPT/TIG domain 424 507 IPR002909 -
Lapu3g02564 990 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Lapu3g02564 990 ProSiteProfiles IQ motif profile. 829 858 IPR000048 GO:0005515
Lapu3g02564 990 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Lapu3g02564 990 Coils Coil 945 965 - -
Lapu3g02564 990 Gene3D - 513 718 IPR036770 -
Lapu3g02564 990 ProSiteProfiles Ankyrin repeat profile. 653 685 IPR002110 GO:0005515
Lapu3g02564 990 SUPERFAMILY E set domains 424 508 IPR014756 -
Lapu3g02564 990 ProSiteProfiles IQ motif profile. 772 797 IPR000048 GO:0005515
Lapu3g02564 990 MobiDBLite consensus disorder prediction 137 183 - -
Lapu3g02564 990 Pfam Ankyrin repeats (3 copies) 636 713 IPR002110 GO:0005515
Lapu3g02564 990 ProSiteProfiles Ankyrin repeat region circular profile. 653 678 - -
Lapu3g02564 990 FunFam Calmodulin-binding transcription activator 2 418 511 - -
Lapu3g02564 990 SUPERFAMILY Ankyrin repeat 618 714 IPR036770 -
Lapu3g02564 990 CDD IPT 424 509 - -
Lapu3g02564 990 SMART iq_5 770 792 IPR000048 GO:0005515
Lapu3g02564 990 SMART iq_5 851 873 IPR000048 GO:0005515
Lapu3g02564 990 SMART iq_5 828 850 IPR000048 GO:0005515
Lapu3g02564 990 FunFam Calmodulin-binding transcription activator 2 828 876 - -
Lapu3g02564 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 875 IPR027417 -
Lapu3g02564 990 ProSiteProfiles IQ motif profile. 852 877 IPR000048 GO:0005515
Lapu3g02564 990 Gene3D Immunoglobulins 418 512 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02564 Lapu-Chr3 47877744 47887072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02564 5 962 CAMTA Transcription Factor Family AT1G67310 52.853 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lapu3g02564 CG-1 3.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02564 K21596 - gmx:100786880 1640.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02564 3 47877744 47887072 Lapu3g02564 3 47877744 47887072 ECH
Lapu6g00062 6 510224 521521 Lapu3g02564 3 47877744 47887072 PCT