Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02560 ATGGGGAAGAAGAAGGTGGAGATAAAGCGAATCGTGAACAAAAGCTCTCGGCAGATAACATTCTCGAAGAGGCGCAATGGATTGATGAAGAAAGCTCTCGAGTTGTCCATTCTCTGCGATGCGAAGGTGGCGCTCTTCATCTTCTCCAGCACCGGGAAGCTCTTCGAGCTCTGCAACGGTGACAGTTTGACCGAGGTCCTGCAACGATATTGGGATTATTTTGGAGTGAGTGGTGCTGATTCAAAGGAACTTTCCTTTAAAATTGCAGAGATTTGGTCTGGTGGAACATTTTCTGAAATGGTCAAAAGGCATTATGGTGTTTCTGAACTAGAACATCTTAGTCTGACTGACCTTATGGAACTAGAGAAATTGATTCTTACTGCTCTTTCGCAAATCAGATCAGCAAAGATGCGATTAATGATGGAATCCGTAAATGATCTTAAGAAAAAGGAACATAAATTGAGAAAAGAAAACGAGCTTTTGGAGAAACAGATTAAGGCAATGGAAAACGCTAACGGTGTCAACAACATGGTGACACTGACTATGGACTGTGAGAAAACAGATGGGGTGACGCATAATCTGCTCCCTGGTTTCTAA 597 0.4271 MGKKKVEIKRIVNKSSRQITFSKRRNGLMKKALELSILCDAKVALFIFSSTGKLFELCNGDSLTEVLQRYWDYFGVSGADSKELSFKIAEIWSGGTFSEMVKRHYGVSELEHLSLTDLMELEKLILTALSQIRSAKMRLMMESVNDLKKKEHKLRKENELLEKQIKAMENANGVNNMVTLTMDCEKTDGVTHNLLPGF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02560 198 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Lapu3g02560 198 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Lapu3g02560 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g02560 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g02560 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g02560 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 158 - -
Lapu3g02560 198 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Lapu3g02560 198 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g02560 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g02560 198 Coils Coil 144 171 - -
Lapu3g02560 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g02560 198 Pfam K-box region 101 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g02560 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02560 Lapu-Chr3 47828291 47851417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02560 1 170 MADS-box Gene Family AT1G26310 45.810 1.32e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu3g02560 K-box 7.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02560 K09264 - gmx:100804540 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02560 3 47828291 47851417 Lapu3g02560 3 47828291 47851417 ECH