Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02546 ATGCAATCTGTGAAGTCACACCCTGCTCTTTCATTTTCTCTTTTCAATCAATTATGCTCTCAGTCTCTCACATCCTTTCTCTCTTTCTCAACCAAATGTCGTTGCCTACACTTCAACGAAACCACTTCCATAATTGATTACCTAAATTCCAACTTCCAATTCTCCACAACCCAATCCCTTTATATTTCTAAACGTGTTTCACGGGGCAGATTCCCTCAAAACCCCTTATCAGTGCTCACTTTTTTCAAACAAATAGGCTTTTCCCAAACCCAGATTCTCTCCGTGATTCGTCAGAGACCCCAGATACTGTTTACAGACGTTGACAGAATCTTGAGACCCAAAATTCAGCTCTTTCAGCTGTCTGGATTCCAGTGTTCCGAGTTATGCAGCTTCATTTCCAAGAATCCCACCGTTTTGACTTGTAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTGTGCGATCAGAAAGAGTTTATTCATGTGTTGCACAGATGTGGTTGGATACTCCCAAAGTACAAAAAGTTTATGGACAATGTCGTCTTCTTGGAGACGTGTGGCATTTTTGGGGCTCATCTTGCATTGCTACTCAAAATTTATCCAAGGTTTTTCCTTGCACAGCAGTCTACTATTGGAAACAGTGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCGAGAATGTGTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGCTGAAGCTAATTAATTATTTTGGGTTTTCCAAACATGAGGGCCTGCAAATGTTCAGGAGAACCCCGATTTTGTTTAGAACATCAGAGAAGAAGTTGAAAGTTGGAATGAAGTTCTTCTTGCATGCAGTTATGCTGCCCAAGTCAGTCCTTATTCATCAGCCTAAGATTTTAATGTACAGCATGGAGGATCGCGTGCTTCCTAGATATAAAGTCTTCCAGCTGTTGAAATCAAAAAATCTTTGCAAGAAAGTCCCCAGTTATATTCATGTTTTGTGCATGTCTGAGGAGAAGTTCTTGGACAAGTATATATCACAGTTCAGAGAAAGTGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAAGCGTAA 1134 0.4012 MQSVKSHPALSFSLFNQLCSQSLTSFLSFSTKCRCLHFNETTSIIDYLNSNFQFSTTQSLYISKRVSRGRFPQNPLSVLTFFKQIGFSQTQILSVIRQRPQILFTDVDRILRPKIQLFQLSGFQCSELCSFISKNPTVLTCSLKKTLVPSVEAIRKIVCDQKEFIHVLHRCGWILPKYKKFMDNVVFLETCGIFGAHLALLLKIYPRFFLAQQSTIGNSVSRAVDLGFRENSRMCVHAIHTLSCLSDKTFERKLKLINYFGFSKHEGLQMFRRTPILFRTSEKKLKVGMKFFLHAVMLPKSVLIHQPKILMYSMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCMSEEKFLDKYISQFRESAEELLVAYKGHYLEA* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02546 377 FunFam Mitochondrial transcription termination factor-like 143 363 - -
Lapu3g02546 377 Gene3D Transcription termination factor 3, mitochondrial 176 363 IPR038538 -
Lapu3g02546 377 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 Pfam mTERF 79 170 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 Pfam mTERF 244 352 IPR003690 GO:0003690|GO:0006355
Lapu3g02546 377 PANTHER CGI-12 PROTEIN-RELATED 41 358 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02546 Lapu-Chr3 47628772 47631060 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu3g02546 mTERF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02546 K15032 - vvi:100268158 332.413