Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02543 ATGAAGAGGGAGCGCGAACAGCTTGGTTCCAGCGCAGGGACCTCAAGCTGCGGATACTCCAGCGGAAAATCGAACCTTTGGGAGGAGGAAGGAGGCATGGACGAGCTTCTGGCGGTCGTGGGTTACAAGGTGAGATACTCCGACATGGAGGAAGTGGCGCAGAAGCTGAAGCGCCTTGATGAAGCCATGGGAGACGAACAAGACGGTCTCAAGGATTTTTCTGACGATGCCGTACACTATAACCCCTCTGACATCTCCAACTGGCTCGAGACCATGCTTTCCAATTTCGACTCCCTTCCTCCAGAAGAACCGCACAAGGACTCCCCCTCTTCCGACTACGATCTCAAGGCTATTCCGGGGAAAGCAATTTACGACGGTGCTGTTACCACCACGCCAAACCCTAAGCGTCTCAAATCTGAGGAGTCAACGCGCTCGTTGGTTGTCGTTGACTCCCAGGAGAATGGGATCCGCCTCGTGCACAGCCTCATTGCGTGCGCGGAGGCCGTCGAAAACAACAACCTCGCCGTGGCGGAGGCGCTGGTGAAGCAGATCGGATTCCTCGCCGTGTCACAGGTTGGAGCCATGCGGAAAGTCGCCACCTACTTTGCGGAAGCGCTCGCGAGGCGAATCTATTGTGTTTTCCCTCCCCAGCACTCGCTCTCAGACTCTCTCCAGATTCACTTCTACGAAACCTGCCCTTACATAAAGTTCGCTCACTTCACCGCAAACCAGGCTATTCTGGAAGCGTTCCAAGGGAAGAGTCGCGTTCACGTCATAGATTTCGGAATCAACCAAGGGATGCAGTGGCCGGCACTGATGCAGGCTCTTGCGCATCGTCCAGGCGGTCCTCCCGCTTTCCGGCTCACCGGCATCGGACCTCCAGCAGCGGATAACTCCGACCACCTCCAGGAAGTCGGATGGAAGCTCGCACAGTTGGCGGAGATTATTCACGTGCAGTTTGAGTACCGCGGCTTCGTCGCCAACAGCCTCGCCGATCTTGACGCATCAATGCTCGACCTCCGAGAAGATGAGCCCGTGGCGGTTAACTCCGTCTTCGAGTTTCACAAGCTCCTGGCGCGCCCCGGTGCCGTCGACAAGGTCCTCTCCGTTGTCCGGCAGGTTCGGCCGGAGATTGTGACCGTGGTGGAGCAAGAATCGAATCACAACGGAGTGAGTTTTCTTGACCGCTTCACTGAGTCGCTACACTATTATTCCACTTTGTTCGACTCGTTGGAGGGTTCGCCTGTGAATCCACAGGATAAGGCGATGTCGGAGGTTTACTTAGGAAAGCAAATCTGTAACGTGGTGGCATGCGAGGGAGTAGACCGCGTGGAACGTCACGAGACCCTGAACCAATGGCGGAACCGGTTCAGTTCGACCGGGTTTTCACCGGTTCATTTGGGTTCCAACGCGTTCAAGCAGGCAAGCATGTTGCTCTCCCTGTTTGCTGGTGGGGATGGGTATAGGGTGGAGGAGAATAGTGGGTGTCTGATGCTGGGATGGCACACAAGGGCCTTGATTGCCACCTCCGCGTGGAAACTCGCTGCAAAATCGCTGGTTGCCACCTGA 1569 0.5615 MKREREQLGSSAGTSSCGYSSGKSNLWEEEGGMDELLAVVGYKVRYSDMEEVAQKLKRLDEAMGDEQDGLKDFSDDAVHYNPSDISNWLETMLSNFDSLPPEEPHKDSPSSDYDLKAIPGKAIYDGAVTTTPNPKRLKSEESTRSLVVVDSQENGIRLVHSLIACAEAVENNNLAVAEALVKQIGFLAVSQVGAMRKVATYFAEALARRIYCVFPPQHSLSDSLQIHFYETCPYIKFAHFTANQAILEAFQGKSRVHVIDFGINQGMQWPALMQALAHRPGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQLAEIIHVQFEYRGFVANSLADLDASMLDLREDEPVAVNSVFEFHKLLARPGAVDKVLSVVRQVRPEIVTVVEQESNHNGVSFLDRFTESLHYYSTLFDSLEGSPVNPQDKAMSEVYLGKQICNVVACEGVDRVERHETLNQWRNRFSSTGFSPVHLGSNAFKQASMLLSLFAGGDGYRVEENSGCLMLGWHTRALIATSAWKLAAKSLVAT* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02543 522 ProSiteProfiles GRAS family profile. 149 513 IPR005202 -
Lapu3g02543 522 Pfam Transcriptional regulator DELLA protein N terminal 34 99 IPR021914 -
Lapu3g02543 522 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 122 509 IPR005202 -
Lapu3g02543 522 Pfam GRAS domain family 158 513 IPR005202 -
Lapu3g02543 522 Gene3D - 32 96 IPR038088 -
Lapu3g02543 522 SMART DELLA_2 34 106 - -
Lapu3g02543 522 MobiDBLite consensus disorder prediction 1 25 - -
Lapu3g02543 522 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lapu3g02543 522 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02543 Lapu-Chr3 47591581 47593662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02543 1 515 GRAS Transcription Factor Family AT2G01570 63.993 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu3g02543 GRAS 3.2e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02543 K14494 - gmx:547718 907.131