Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02512 ATGGAATATCGTAAAGAAGGGTCCTCTTACTATAACGTTCTTGGTGTTAGTTCAGATTCTAACTTGGAAGAGATAAAGCGTGCTTACAGAAAGCTTGCTATGCAATGGCACCCTGATAGGTGGACAAAGACGCCTTCTTTGTTGGGTGAAGCCAAACACAGATTTCAGCAAATTCAAGAAGCCTATTCTGTGTTGTCGGACCGTAAGAAAAGGACTATTTATGATGCGGGTTTGTATGATCCTCAAGAGGAAGAGGATGAGGGGTTTTCTGATTTTTTGGAAGAAATGTTGTCTCTCATGGCTCAAGCGAGGAGAGAGAAAAAGCATTACGGTTTGGAAGAGTTGCAGGGGATGTTGATGGAAATGGCTAAAGGATTCGAGGGTCCTTCAATGTACTGTGGGGTGCCCTCTGTGATTGATGAGTCTCGGTGCTTAAAGAGGACTCGTTTTGACACAAGCACGATGGAGAATAAGGGGTCACATTTTCAAGTACCTGATCTTAACCTCTATTGCAGTTAA 519 0.4316 MEYRKEGSSYYNVLGVSSDSNLEEIKRAYRKLAMQWHPDRWTKTPSLLGEAKHRFQQIQEAYSVLSDRKKRTIYDAGLYDPQEEEDEGFSDFLEEMLSLMAQARREKKHYGLEELQGMLMEMAKGFEGPSMYCGVPSVIDESRCLKRTRFDTSTMENKGSHFQVPDLNLYCS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02512 172 Gene3D DnaJ domain 1 97 IPR036869 -
Lapu3g02512 172 PANTHER PUTATIVE, EXPRESSED-RELATED 2 131 - -
Lapu3g02512 172 SMART dnaj_3 8 70 IPR001623 -
Lapu3g02512 172 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Lapu3g02512 172 CDD DnaJ 10 67 IPR001623 -
Lapu3g02512 172 SUPERFAMILY Chaperone J-domain 6 81 IPR036869 -
Lapu3g02512 172 PRINTS DnaJ domain signature 11 29 IPR001623 -
Lapu3g02512 172 PRINTS DnaJ domain signature 50 70 IPR001623 -
Lapu3g02512 172 PRINTS DnaJ domain signature 29 44 IPR001623 -
Lapu3g02512 172 Pfam DnaJ domain 10 75 IPR001623 -
Lapu3g02512 172 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02512 Lapu-Chr3 47146072 47147013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02512 4 76 C2H2 Transcription Factor Family AT1G74250 45.946 1.20e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02512 - - gmx:100306079 300.056